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| Status |
Public on Apr 22, 2024 |
| Title |
Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38720882 |
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| Submission date |
Nov 12, 2023 |
| Last update date |
Jul 24, 2024 |
| Contact name |
Masaki Fukuyo |
| E-mail(s) |
fukuyo@chiba-u.jp
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| Organization name |
Chiba University
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| Department |
Department of Molecular Oncology
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| Street address |
1-8-1 Inohana, Chuo-ku
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| City |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
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| Platforms (3) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL21697 |
NextSeq 550 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (52)
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| GSM7892607 |
SNU719, H3K4me1, CST, rep 1 |
| GSM7892608 |
SNU719, H3K4me1, CST, rep 2 |
| GSM7892609 |
YCC10, H3K4me1, CST, rep 1 |
| GSM7892610 |
YCC10, H3K4me1, CST, rep 2 |
| GSM7892611 |
SNU719, H3K27ac, Active Motif, rep 1 |
| GSM7892612 |
SNU719, H3K27ac, Active Motif, rep 2 |
| GSM7892613 |
YCC10, H3K27ac, Active Motif, rep 1 |
| GSM7892614 |
YCC10, H3K27ac, Active Motif, rep 2 |
| GSM7892615 |
GES1, ATAC, rep 1 |
| GSM7892616 |
SNU719, ATAC, rep 1 |
| GSM7892617 |
SNU719, ATAC, rep 2 |
| GSM7892618 |
YCC10, ATAC, rep 1 |
| GSM7892619 |
YCC10, ATAC, rep 2 |
| GSM7892620 |
GES1, TCF7, CST, rep 1 |
| GSM7892621 |
GES1, TCF7, CST, rep 2 |
| GSM7892622 |
SNU719, TCF7, CST, rep 1 |
| GSM7892623 |
SNU719, TCF7, CST, rep 2 |
| GSM7892624 |
YCC10, TCF7, CST, rep 1 |
| GSM7892625 |
YCC10, TCF7, CST, rep 2 |
| GSM7892626 |
SNU719, H3K27ac, Active Motif, CRISPRi, Ctrl, rep 1 |
| GSM7892627 |
SNU719, H3K27ac, Active Motif, CRISPRi, Ctrl, rep 2 |
| GSM7892628 |
YCC10, H3K27ac, Active Motif, CRISPRi, Ctrl, rep 1 |
| GSM7892629 |
YCC10, H3K27ac, Active Motif, CRISPRi, Ctrl, rep 2 |
| GSM7892630 |
SNU719, H3K27ac, Active Motif, CRISPRi, MYB, enhancer, rep 1 |
| GSM7892631 |
SNU719, H3K27ac, Active Motif, CRISPRi, MYB, enhancer, rep 2 |
| GSM7892632 |
YCC10, H3K27ac, Active Motif, CRISPRi, MYB, enhancer, rep 1 |
| GSM7892633 |
YCC10, H3K27ac, Active Motif, CRISPRi, MYB, enhancer, rep 2 |
| GSM7892634 |
SNU719, MYB, KD, siCtrl, rep 1 |
| GSM7892635 |
SNU719, MYB, KD, siCtrl, rep 2 |
| GSM7892636 |
YCC10, MYB, KD, siCtrl, rep 1 |
| GSM7892637 |
YCC10, MYB, KD, siCtrl, rep 2 |
| GSM7892638 |
SNU719, MYB, KD, siMYB, rep 1 |
| GSM7892639 |
SNU719, MYB, KD, siMYB, rep 2 |
| GSM7892640 |
YCC10, MYB, KD, siMYB, rep 1 |
| GSM7892641 |
YCC10, MYB, KD, siMYB, rep 2 |
| GSM7892642 |
SNU719, TCF7, KD, siCtrl, rep 1 |
| GSM7892643 |
YCC10, TCF7, KD, siCtrl, rep 1 |
| GSM7892644 |
SNU719, TCF7, KD, siTCF7, rep 1 |
| GSM7892645 |
YCC10, TCF7, KD, siTCF7, rep 1 |
| GSM7892646 |
SNU719, CRISPRi, sgCtrl, rep 1 |
| GSM7892647 |
YCC10, CRISPRi, sgCtrl, rep 1 |
| GSM7892648 |
SNU719, CRISPRi, sgMYB-E3, rep 1 |
| GSM7892649 |
YCC10, CRISPRi, sgMYB-E3, rep 1 |
| GSM8164514 |
SNU719, H3K27ac, Acitve Motif, siCtrl, rep 1 |
| GSM8164515 |
SNU719, H3K27ac, Acitve Motif, siTCF7, rep 1 |
| GSM8164530 |
SNU719, 4C-seq, siCtrl, rep 1 |
| GSM8164531 |
SNU719, 4C-seq, siTCF7, rep 1 |
| GSM8164532 |
SNU719, 4C-seq, CRISPRi, sgCtrl, rep1 |
| GSM8164533 |
SNU719, 4C-seq, CRISPRi, sgMYB, enhancer, rep1 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE247536 |
Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer (HiChIP) |
| GSE247537 |
Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer (ChIP) |
| GSE247538 |
Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer (RNA-seq) |
| GSE262406 |
Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer (4C) |
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| Relations |
| BioProject |
PRJNA1039485 |
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