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121 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			NARROWPEAK
GSE212029	B16 and 4T1 cell lines with decitabine treatment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	BW NARROWPEAK	Eric Greer	Jun 30, 2024
GSE268934	Colorectal cancer progression to metastasis is associated with dynamic genome-wide biphasic 5-hydroxymethylcytosine accumulation.	Methylation profiling by high throughput sequencing	Homo sapiens	18	NARROWPEAK	Adele Murrell	Jun 28, 2024
GSE236728	Synthetic essentiality of thymine DNA glycosylase in p53-deficient cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BEDGRAPH BW MTX NARROWPEAK TSV	Zhenyu Shao	Jun 19, 2024
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE264346	Epigenetic Basis for the Establishment of Ruminal Tissue-Specific Functions	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus	48	BEDGRAPH BW NARROWPEAK TXT	jing wang	Jun 01, 2024
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE230602	Overcoming Lineage Plasticity and AR-Targeted Therapy Resistance in ZNF397-Deficient Prostate Cancer via TET2 Inhibition	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	51	BW NARROWPEAK TXT	Ping Mu	Apr 05, 2024
GSE197569	Aberrant DNA methylation distorts developmental trajectories in atypical teratoid/rhabdoid tumors	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	31	NARROWPEAK TXT	Kirsi Rautajoki	Mar 04, 2024
GSE226180	The TET-BMP regulatory axis in pathogenesis of CFM [hMeDIPseq]	Methylation profiling by high throughput sequencing	Danio rerio	4	BW NARROWPEAK	Liangliang Wang	Mar 04, 2024
GSE226184	The TET-Sall4-BMP regulatory axis controls craniofacial cartilage development	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	12	BW MTX NARROWPEAK TSV TXT	Liangliang Wang	Mar 04, 2024
GSE255275	Regional Centromere Configuration in the Fungal Pathogens of Pneumocystis Genus	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Pneumocystis carinii Pneumocystis murina	35	BED BEDGRAPH BROADPEAK BW NARROWPEAK	Ousmane Hamadoun Cisse	Feb 08, 2024
GSE236290	MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	146	BED BW MTX NARROWPEAK TSV TXT WIG	Shuya Wang	Jan 12, 2024
GSE230405	TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [5hmC-Seal-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	7	NARROWPEAK	Bing Yao	Jan 03, 2024
GSE230410	TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	32	NARROWPEAK	Bing Yao	Jan 03, 2024
GSE240438	Epitranscriptome profiling of m6A in colon cancer cell lines	Methylation profiling by high throughput sequencing Other	Homo sapiens	10	BW NARROWPEAK	Samson Mani	Dec 30, 2023
GSE247320	Histone methyltransferase Ezh2 coordinates mammalian axon regeneration via regulation of key regenerative pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	38	BB NARROWPEAK	Xuewei Wang	Dec 22, 2023
GSE213771	ATAC-seq, RNA-seq and RRBS of TET2-mutant human neutrophils	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	20	BIGWIG NARROWPEAK	Dominique Bonnet	Dec 01, 2023
GSE231834	N6-methyladenosine RNA modification drives a rapid shift to cisplatin resistance in bladder cancer by regulating SLC7A11 expression via YTHDF3 [RIP-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	20	BED BW NARROWPEAK	Emmanuelle Hodara	Nov 08, 2023
GSE231836	N6-methyladenosine RNA modification drives a rapid shift to cisplatin resistance in bladder cancer by regulating SLC7A11 expression via YTHDF3	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BW NARROWPEAK TXT	Emmanuelle Hodara	Nov 08, 2023
GSE240413	Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation [5mC]	Methylation profiling by high throughput sequencing	Mus musculus	16	NARROWPEAK	Bing Yao	Oct 25, 2023