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Series GSE212029 Query DataSets for GSE212029
Status Public on Jun 30, 2024
Title B16 and 4T1 cell lines with decitabine treatment
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
Web link https://pubmed.ncbi.nlm.nih.gov/39169233/
 
Citation(s) 39169233
Submission date Aug 25, 2022
Last update date Sep 30, 2024
Contact name Eric Greer
E-mail(s) Eric.Greer@childrens.harvard.edu
Organization name Boston Children's Hospital/Harvard Medical School
Department Newborn Medicine/Department of Pediatrics
Lab Greer Lab
Street address 320 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (36)
GSM6507511 B16F10 control replicate 1 [ATAC-seq]
GSM6507512 B16F10 control replicate 2 [ATAC-seq]
GSM6507513 B16F10 control replicate 3 [ATAC-seq]
This SuperSeries is composed of the following SubSeries:
GSE212026 Chromatin accessibility in B16 and 4T1 cell lines with decitabine treatment [ATAC-seq]
GSE212027 Transcriptome analysis in B16F10 and 4T1 cell lines with decitabine treatment [RNA-seq]
GSE212028 Genomewide methylation analysis of B16F10 and 4T1 after Decitabine treatment with Reduced Representative Bisulfite Sequencing [RRBS]
Relations
BioProject PRJNA873582

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212029_RAW.tar 495.6 Mb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp

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