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GEO accession:
Series GSE212029
Query DataSets for GSE212029
Status
Public on Jun 30, 2024
Title
B16 and 4T1 cell lines with decitabine treatment
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://pubmed.ncbi.nlm.nih.gov/39169233/
Citation(s)
39169233
Submission date
Aug 25, 2022
Last update date
Sep 30, 2024
Contact name
Eric Greer
E-mail(s)
Eric.Greer@childrens.harvard.edu
Organization name
Boston Children's Hospital/Harvard Medical School
Department
Newborn Medicine/Department of Pediatrics
Lab
Greer Lab
Street address
320 Longwood Avenue
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (2)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (36)
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GSM6507511
B16F10 control replicate 1 [ATAC-seq]
GSM6507512
B16F10 control replicate 2 [ATAC-seq]
GSM6507513
B16F10 control replicate 3 [ATAC-seq]
GSM6507514
B16F10 DAC replicate 1 [ATAC-seq]
GSM6507515
B16F10 DAC replicate 2 [ATAC-seq]
GSM6507516
B16F10 DAC replicate 3 [ATAC-seq]
GSM6507517
4T1 control replicate 1 [ATAC-seq]
GSM6507518
4T1 control replicate 2 [ATAC-seq]
GSM6507519
4T1 control replicate 3 [ATAC-seq]
GSM6507520
4T1 DAC replicate 1 [ATAC-seq]
GSM6507521
4T1 DAC replicate 2 [ATAC-seq]
GSM6507522
4T1 DAC replicate 3 [ATAC-seq]
GSM6507523
B16F10 control replicate 1 [RNA-seq]
GSM6507524
B16F10 control replicate 2 [RNA-seq]
GSM6507525
B16F10 control replicate 3 [RNA-seq]
GSM6507526
B16F10 DAC replicate 1 [RNA-seq]
GSM6507527
B16F10 DAC replicate 2 [RNA-seq]
GSM6507528
B16F10 DAC replicate 3 [RNA-seq]
GSM6507529
4T1 control replicate 1 [RNA-seq]
GSM6507530
4T1 control replicate 2 [RNA-seq]
GSM6507531
4T1 control replicate 3 [RNA-seq]
GSM6507532
4T1 DAC replicate 1 [RNA-seq]
GSM6507533
4T1 DAC replicate 2 [RNA-seq]
GSM6507534
4T1 DAC replicate 3 [RNA-seq]
GSM6507535
B16F10 control replicate 1 [RRBS]
GSM6507536
B16F10 control replicate 2 [RRBS]
GSM6507537
B16F10 control replicate 3 [RRBS]
GSM6507538
B16F10 DAC replicate 1 [RRBS]
GSM6507539
B16F10 DAC replicate 2 [RRBS]
GSM6507540
B16F10 DAC replicate 3 [RRBS]
GSM6507541
4T1 control replicate 1 [RRBS]
GSM6507542
4T1 control replicate 2 [RRBS]
GSM6507543
4T1 control replicate 3 [RRBS]
GSM6507544
4T1 DAC replicate 1 [RRBS]
GSM6507545
4T1 DAC replicate 2 [RRBS]
GSM6507546
4T1 DAC replicate 3 [RRBS]
This SuperSeries is composed of the following SubSeries:
GSE212026
Chromatin accessibility in B16 and 4T1 cell lines with decitabine treatment [ATAC-seq]
GSE212027
Transcriptome analysis in B16F10 and 4T1 cell lines with decitabine treatment [RNA-seq]
GSE212028
Genomewide methylation analysis of B16F10 and 4T1 after Decitabine treatment with Reduced Representative Bisulfite Sequencing [RRBS]
Relations
BioProject
PRJNA873582
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE212029_RAW.tar
495.6 Mb
(http)
(custom)
TAR (of BW, NARROWPEAK)
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