GEO Browser - GEO

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123 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			RDS
GSE237637	The transcriptional landscape associated with the deletion of Regnase-1 [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BW NARROWPEAK RDS	Xin Sun	May 30, 2024
GSE243003	Metabolic adaptation pilots the differentiation of human hematopoietic cells (bulk ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	41	CSV RDS	Laëtitia RACINE	May 22, 2024
GSE247130	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [1]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BROADPEAK CLOUPE H5 RDS TBI TSV	Dalia Hassan	Apr 18, 2024
GSE256495	Convergent Epigenetic Evolution Drives Relapse in Acute Myeloid Leukemia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	195	RDS	Ravindra Majeti	Apr 17, 2024
GSE264098	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BROADPEAK BW RDS	Dalia Hassan	Apr 16, 2024
GSE263367	Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal mechanisms of chromatin-mediated transcriptional regulation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	201	RDS	David MacAlpine	Apr 12, 2024
GSE249785	Childhood cancer mutagenesis caused by a domesticated DNA transposase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	RDS	Claudia L Kleinman	Mar 27, 2024
GSE261332	Systematic decoding of cis gene regulation defines context-dependent control of the multi-gene costimulatory receptor locus in human T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	44	RDS WIG	Alexander Marson	Mar 24, 2024
GSE261078	Deciphering cell states and genealogies of human hematopoiesis with single-cell multi-omics [Extended donors]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	9	H5 RDS TSV TXT	Chen Weng	Mar 09, 2024
GSE260504	ATAC-seq of TNF-alpha activation in HEK cells with or without TRAFTAC against NfkB	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW NARROWPEAK RDS	Pierre-Luc Germain	Mar 04, 2024
GSE231779	Spatial enhancer activation influences inhibitory neuron identity during mouse embryonic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV NARROWPEAK RDS	Christian Mayer	Feb 19, 2024
GSE237987	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors and Its Deficiency Drives Pre-memory B-cell Fate and Lymphomagenesis [Arid1a_multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	RDS TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE230579	Single-mitosis dissection of acute and chronic DNA mutagenesis and repair	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Mus musculus castaneus	32	RDS	Paul Adrian Ginno	Jan 26, 2024
GSE247391	Fate-mapping via Spp1-expression history revealed innate immune memory of microglia imprinted by neonatal injury [Spp1Tdt]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	60	BW CSV RDS ZIP	DANYANG HE	Jan 24, 2024
GSE211785	Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	80	H5AD JSON RDS TIFF TXT	Jonathan Levinsohn	Jan 17, 2024
GSE153331	Astrocyte Reactivity and Cognitive Decline Follow Chronic Heterochromatin Loss in Neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	71	BEDGRAPH BW COV CSV RDS TXT SRA Run Selector	Andrew Newman	Jan 10, 2024
GSE226267	Epigenetic dysregulation in Alzheimer s disease peripheral immunity - ATAC	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	50	RDS	David Gate	Jan 03, 2024
GSE225503	scRNAseq and scATACseq of Cd45+ cells from brains of 5XFAD mice bearing distinct APOE alleles and across age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	8	H5 RDS TBI TSV	Alon Millet	Dec 29, 2023
GSE239999	An Exhausted-Like Microglial Population Accumulates in Aged and APOE4 Genotype Alzheimer’s Brains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	H5 RDS SF TBI TSV	Alon Millet	Dec 29, 2023
GSE250589	Distinct transcriptomic and epigenomic responses of mature oligodendrocytes during disease progression in a mouse model of multiple sclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BEDPE BW H5 RDS TBI TSV	Bastien Hervé	Dec 20, 2023