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11 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Lactiplantibacillus plantarum			SRA Run Selector
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199		BEDGRAPH TXT XLSX SRA Run Selector	Vicent Pelechano	Mar 24, 2023
GSE185970	Transcriptome of Lactobacillus plantarum NMM.1 isolated from Inner Mongolia raw milk	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	6		TXT SRA Run Selector	Kailin Li	Feb 10, 2022
GSE144084	Promoter Identification and Optimization for the Response of Lactobacillus plantarum WCFS1 to the Gram-negative pathogen-associated molecule N-3-oxododecanoyl homoserine lactone	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	6		CSV SRA Run Selector	Joseph Spangler	Jan 21, 2022
GSE172351	Transcriptome analyses of aggregating Lactiplantibacillus plantarum	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	11		CSV TXT SRA Run Selector	Marc Stevens	Apr 20, 2021
GSE160565	Cranberry proanthocyanidins and dietary oligosaccharides synergistically modulate Lactobacillus plantarum physiology	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	22		CSV TXT SRA Run Selector	Ezgi Ozcan	Dec 01, 2020
GSE143834	Characterization of Lactobacillus plantarum gene expression in the acidic conditions	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	6		XLSX SRA Run Selector	JongHee Lee	Oct 27, 2020
GSE124050	Response of Lactobacillus plantarum WCSF1 to the Gram-negative pathogen-associated quorum sensing molecule N-3-oxododecanoyl homoserine lactone.	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	36		TXT SRA Run Selector	Scott Nathan Dean	Dec 19, 2018
GSE115448	How Lactobacillus plantarum Shapes its Transcriptome in Response to Contrasting Habitats	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	36		TXT SRA Run Selector	pasquale filannino	Nov 14, 2018
GSE101169	Trascriptomic profiles of Lactobacillus plantarum strains isolated from cheeses	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	12		TXT SRA Run Selector	Maria De Angelis	Jul 12, 2017
GSE99096	Global transcriptional responses to oxidative stress conditions in lactobacillus plantarum	Expression profiling by high throughput sequencing	Lactiplantibacillus plantarum	6		TXT XLSX SRA Run Selector	Yang Yang	May 25, 2017
GSE69872	The Epigenomic Landscape of Prokaryotes	Methylation profiling by high throughput sequencing	Acetivibrio clariflavus 4-2a Acetivibrio thermocellus ATCC 27405 Acetivibrio thermocellus DSM 1313 Acetobacterium woodii DSM 1030 Acidobacteriaceae bacterium KBS 146 Acidobacteriaceae bacterium TAA 166 Acidovorax sp. JHL-3 Actinobacillus succinogenes 130Z Actinosynnema mirum DSM 43827 Agrobacterium fabrum str. C58 Akkermansia muciniphila ATCC BAA-835 Algoriphagus marincola HL-49 Alicyclobacillus macrosporangiidus CPP55 Allomeiothermus silvanus DSM 9946 Alteromonas sp. ALT199 Aminiphilus circumscriptus DSM 16581 Aminobacterium colombiense DSM 12261 Anoxybacillus flavithermus WK1 Arthrobacter sp. 31Y Asinibacterium sp. OR53 Bacillus spizizenii str. W23 Bacteroides sp. 14(A) Bernardetia litoralis DSM 6794 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 Bradyrhizobium elkanii USDA 76 Bryobacter aggregatus MPL3 Butyrivibrio sp. AE3003 Butyrivibrio sp. AE3004 Butyrivibrio sp. FCS014 Caldicoprobacter oshimai DSM 21659 Caldithrix abyssi DSM 13497 Calidithermus chliarophilus DSM 9957 Capnocytophaga ochracea DSM 7271 Cellulomonas sp. KRMCY2 Cellulophaga algicola DSM 14237 Cellulophaga lytica DSM 7489 Cellvibrionaceae bacterium 1162T.S.0a.05 Chloroflexus aggregans DSM 9485 Clostridioides difficile 630 Clostridioides mangenotii LM2 Clostridium algidicarnis Clostridium perfringens ATCC 13124 Clostridium sp. 12(A) Clostridium sp. ASBs410 Clostridium sp. KNHs205 Cohnella panacarvi Gsoil 349 Coraliomargarita akajimensis DSM 45221 Corynebacterium aurimucosum ATCC 700975 Cronobacter Desulfobacca acetoxidans DSM 11109 Desulfohalovibrio reitneri Desulforegula conservatrix Mb1Pa Desulfospira joergensenii DSM 10085 Desulfotignum balticum DSM 7044 Desulfurobacterium sp. TC5-1 Dinoroseobacter shibae DFL 12 = DSM 16493 Dyadobacter fermentans DSM 18053 Echinicola vietnamensis DSM 17526 Enterococcus faecalis 68A Enterococcus gallinarum Escherichia coli CFT073 Escherichia coli str. K-12 substr. MG1655 Eubacterium sp. AB3007 Exiguobacterium acetylicum DSM 20416 Exiguobacterium antarcticum DSM 14480 Exiguobacterium aurantiacum DSM 6208 Exiguobacterium chiriqhucha Exiguobacterium oxidotolerans JCM 12280 Fervidobacterium nodosum Rt17-B1 Flavimarina sp. Hel_I_48 Flavobacterium psychrophilum JIP02/86 Flexistipes sinusarabici DSM 4947 Galbibacter orientalis Geopsychrobacter electrodiphilus DSM 16401 Gillisia limnaea DSM 15749 Gillisia sp. JM1 Gracilinema caldarium DSM 7334 Halomicrobium katesii DSM 19301 Haloterrigena turkmenica DSM 5511 Hippea alviniae EP5-r Hippea sp. KM1 Hirschia baltica ATCC 49814 Holophaga foetida DSM 6591 Hydrogenovibrio crunogenus XCL-2 Hydrogenovibrio kuenenii DSM 12350 Hydrogenovibrio marinus DSM 11271 Hydrogenovibrio sp. MA2-6 Kallotenue papyrolyticum Kangiella aquimarina DSM 16071 Klebsiella aerogenes FGI35 Klebsiella oxytoca BRL6-2 Lachnobacterium bovis Lachnoclostridium phytofermentans KNHs212 Lachnoclostridium phytofermentans KNHs2132 Lachnospiraceae bacterium AC2012 Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2031 Lacrimispora indolis DSM 755 Lacrimispora indolis SR3 Lactiplantibacillus plantarum Lactococcus lactis subsp. lactis Leptolyngbya sp. PCC 6406 Levilactobacillus brevis AG48 Limisalsivibrio acetivorans Maribacter sp. Hel_I_7 Marinithermus hydrothermalis DSM 14884 Mastigocladopsis repens PCC 10914 Mediterraneibacter gnavus AGR2154 Meiothermus ruber DSM 1279 Methanocaldococcus jannaschii DSM 2661 Methanocorpusculum labreanum Z Methanohalophilus mahii DSM 5219 Methanospirillum hungatei JF-1 Methanothermus fervidus DSM 2088 Methylobacter tundripaludum 21/22 Methylobacterium sp. 10 Methylobacterium sp. EUR3 AL-11 Methylocystis sp. LW5 Methylohalobius crimeensis 10Ki Methylophilaceae bacterium 11 Methylophilus sp. 1 Methylophilus sp. 42 Methylophilus sp. 5 Methylorubrum extorquens AM1 Methylotenera sp. 73s Methylotenera versatilis 79 Microbacterium sp. KROCY2 Mycoplasmopsis bovis PG45 Neisseria gonorrhoeae FA 1090 Neisseria meningitidis FAM18 Niabella soli DSM 19437 Nitratifractor salsuginis DSM 16511 Nitriliruptor alkaliphilus DSM 45188 Nocardia sp. BMG111209 Nocardia sp. BMG51109 Oceanicola sp. HL-35 Orenia marismortui DSM 5156 Oxalobacteraceae bacterium AB_14 Palaeococcus ferrophilus DSM 13482 Parabacteroides distasonis ATCC 8503 Patulibacter minatonensis DSM 18081 Pediococcus acidilactici AGR20 Pedobacter heparinus DSM 2366 Pelobacter seleniigenes DSM 18267 Peptostreptococcaceae bacterium VA2 Persephonella Phaeobacter inhibens DSM 17395 Phocaeicola salanitronis DSM 18170 Planctopirus limnophila DSM 3776 Polaribacter sp. Hel_I_88 Polaromonas sp. EUR3 1.2.1 Polycyclovorans algicola TG408 Pontibacter actiniarum DSM 19842 Prevotella sp. 10(H) Prevotella sp. HUN102 Pseudacidobacterium ailaaui Pseudarthrobacter chlorophenolicus A6 Pseudobutyrivibrio ruminis HUN009 Pseudofrankia sp. DC12 Pseudomonas aeruginosa NCAIM B.001380 Psychrilyobacter atlanticus DSM 19335 Pyrococcus horikoshii OT3 Rhizobium etli CIAT 652 Rhodopseudomonas palustris CGA009 Rikenella microfusus DSM 15922 Robinsoniella sp. KNHs210 Ruminiclostridium josui JCM 17888 Ruminococcaceae bacterium AE2021 Ruminococcus albus AD2013 Ruminococcus flavefaciens AE3010 Ruminococcus sp. HUN007 Ruminococcus sp. NK3A76 Saccharomonospora viridis DSM 43017 Salmonella bongori NCTC 12419 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Sebaldella termitidis ATCC 33386 Sedimentitalea nanhaiensis DSM 24252 Sediminibacter sp. Hel_I_10 Sediminispirochaeta smaragdinae DSM 11293 Selenomonas ruminantium AC2024 Selenomonas sp. AB3002 Shewanella woodyi ATCC 51908 Sinorhizobium medicae WSM1115 Solidesulfovibrio cf. magneticus IFRC170 Solitalea canadensis DSM 3403 Sphaerobacter thermophilus DSM 20745 Sphingomonas melonis C3 Spirochaeta africana DSM 8902 Spirochaeta thermophila DSM 6578 Sporocytophaga myxococcoides DSM 11118 Staphylococcus aureus subsp. aureus USA300_TCH1516 Staphylococcus epidermidis AG42 Staphylothermus marinus F1 Streptobacillus moniliformis DSM 12112 Streptococcus equinus Streptomyces sp. WMMB 714 Streptosporangium roseum DSM 43021 Stutzerimonas stutzeri RCH2 Sulfolobus acidocaldarius DSM 639 Sulfurimonas denitrificans DSM 1251 Sulfurospirillum barnesii SES-3 Syntrophobotulus glycolicus DSM 8271 Syntrophothermus lipocalidus DSM 12680 Teredinibacter purpureus Teredinibacter turnerae Thermacetogenium phaeum DSM 12270 Thermanaerovibrio acidaminovorans DSM 6589 Thermoanaerobacter sp. X514 Thermobacillus composti KWC4 Thermogemmatispora carboxidivorans Thermoplasma acidophilum DSM 1728 Thermoplasma volcanium GSS1 Thermosipho melanesiensis BI429 Thioalkalivibrio sp. ARh3 Thiobacillus denitrificans ATCC 25259 Thiomicrospira pelophila DSM 1534 Thiomonas sp. FB-6 Tolumonas lignilytica Treponema denticola ATCC 35405 Treponema succinifaciens DSM 2489 Veillonella parvula DSM 2008 Verrucomicrobia bacterium LP2A Xanthobacter sp. 91 Xenorhabdus nematophila ATCC 19061 Xylella fastidiosa Temecula1 Zymomonas mobilis subsp. pomaceae ATCC 29192	237		CSV GFF SRA Run Selector	Matthew James Blow	Jan 20, 2016