144 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterEscherichia coli str. K-12 substr. MG1655 Remove filterSRA Run Selector
GSE104303
Chaperone saturation mediates translation and protein folding efficiency
30 Vincent J Hilser Oct 27, 2024
GSE119965
Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution
8 Donghyuk Kim Dec 15, 2023
GSE155243
Anatomy of footprint extension in ribosome profiling reveals translational landscape mediated by S1 protein in bacteria
  • Link icon Escherichia coli str. K-12 substr. MG1655
25 tomoya fujita Jul 28, 2023
GSE54902
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]
  • Link icon Escherichia coli str. K-12 substr. MG1655
32 Donghyuk Kim Jan 05, 2023
GSE54904
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]
24 Donghyuk Kim Jan 05, 2023
GSE165008
Transcriptome profile of Escherichia coli K12 MG1655 cells lacking selected genes
  • Link icon Escherichia coli str. K-12 substr. MG1655
8 Ioly Kotta-Loizou Nov 02, 2022
GSE165009
Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells
  • Link icon Escherichia coli str. K-12 substr. MG1655
16 Ioly Kotta-Loizou Nov 02, 2022
GSE179691
Ribosome collisions in bacteria promote ribosome rescue by triggering mRNA cleavage by SmrB
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Allen R Buskirk Aug 01, 2022
GSE166046
Transcriptomic analysis of an E. coli deletion mutant of the two C-terminal OB fold domains of r-protein S1
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Stefano Marzi Jul 31, 2022
GSE206047
Transcriptional Response to Inducers for E. coli and B. subtilis
1344 Joshua Urrutia Jun 16, 2022
GSE179913
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [Genome wide screen]
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Chase Beisel Jun 08, 2022
GSE179914
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [RNA-seq]
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Chase Beisel Jun 08, 2022
GSE178278
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
  • Link icon Escherichia coli str. K-12 substr. MG1655
12 Andre Sanches Ribeiro Jun 07, 2022
GSE178279
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
  • Link icon Escherichia coli str. K-12 substr. MG1655
12 Andre Sanches Ribeiro Jun 07, 2022
GSE131514
RiboReport - Benchmarking ribosome profiling based identification of open reading frames in bacteria.
  • Link icon Escherichia coli str. K-12 substr. MG1655
3
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Florian Eggenhofer May 20, 2022
GSE188752
Sequence-dependent model of genes with dual σ factor preference
  • Link icon Escherichia coli str. K-12 substr. MG1655
6 Andre Sanches Ribeiro Mar 22, 2022
GSE171969
Pervasive transcription-coupled DNA repair in E. coli [CPD-seq]
  • Link icon Escherichia coli str. K-12 substr. MG1655
49 Evgeny Nudler Feb 05, 2022
GSE171970
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 1]
  • Link icon Escherichia coli str. K-12 substr. MG1655
8 Evgeny Nudler Feb 05, 2022
GSE171971
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 2]
  • Link icon Escherichia coli str. K-12 substr. MG1655
3 Evgeny Nudler Feb 05, 2022
GSE152214
Global pleiotropic effects in adaptively evolved Escherichia coli lacking CRP reveal molecular mechanisms that define growth physiology
  • Link icon Escherichia coli str. K-12 substr. MG1655
24 Ankita Pal Dec 31, 2021