Accession | Title | Series type(s) | Organism(s) | Samples | GDS | Supplementary | Contact | Release date |
---|---|---|---|---|---|---|---|---|
Filter | Escherichia coli str. K-12 substr. MG1655 | SRA Run Selector | ||||||
GSE104303 |
Chaperone saturation mediates translation and protein folding efficiency
|
|
30 |
|
Vincent J Hilser | Oct 27, 2024 | ||
GSE119965 |
Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution
|
|
8 |
|
Donghyuk Kim | Dec 15, 2023 | ||
GSE155243 |
Anatomy of footprint extension in ribosome profiling reveals translational landscape mediated by S1 protein in bacteria
|
25 |
|
tomoya fujita | Jul 28, 2023 | |||
GSE54902 |
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]
|
32 |
|
Donghyuk Kim | Jan 05, 2023 | |||
GSE54904 |
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]
|
|
24 |
|
Donghyuk Kim | Jan 05, 2023 | ||
GSE165008 |
Transcriptome profile of Escherichia coli K12 MG1655 cells lacking selected genes
|
8 |
|
Ioly Kotta-Loizou | Nov 02, 2022 | |||
GSE165009 |
Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells
|
16 |
|
Ioly Kotta-Loizou | Nov 02, 2022 | |||
GSE179691 |
Ribosome collisions in bacteria promote ribosome rescue by triggering mRNA cleavage by SmrB
|
4 | Allen R Buskirk | Aug 01, 2022 | ||||
GSE166046 |
Transcriptomic analysis of an E. coli deletion mutant of the two C-terminal OB fold domains of r-protein S1
|
4 |
|
Stefano Marzi | Jul 31, 2022 | |||
GSE206047 |
Transcriptional Response to Inducers for E. coli and B. subtilis
|
|
1344 |
|
Joshua Urrutia | Jun 16, 2022 | ||
GSE179913 |
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [Genome wide screen]
|
4 |
|
Chase Beisel | Jun 08, 2022 | |||
GSE179914 |
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [RNA-seq]
|
4 |
|
Chase Beisel | Jun 08, 2022 | |||
GSE178278 |
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
|
12 |
|
Andre Sanches Ribeiro | Jun 07, 2022 | |||
GSE178279 |
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
|
12 |
|
Andre Sanches Ribeiro | Jun 07, 2022 | |||
GSE131514 |
RiboReport - Benchmarking ribosome profiling based identification of open reading frames in bacteria.
|
3 |
|
Florian Eggenhofer | May 20, 2022 | |||
GSE188752 |
Sequence-dependent model of genes with dual σ factor preference
|
6 |
|
Andre Sanches Ribeiro | Mar 22, 2022 | |||
GSE171969 |
Pervasive transcription-coupled DNA repair in E. coli [CPD-seq]
|
49 |
|
Evgeny Nudler | Feb 05, 2022 | |||
GSE171970 |
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 1]
|
8 |
|
Evgeny Nudler | Feb 05, 2022 | |||
GSE171971 |
Pervasive transcription-coupled DNA repair in E. coli [RNA-seq 2]
|
3 |
|
Evgeny Nudler | Feb 05, 2022 | |||
GSE152214 |
Global pleiotropic effects in adaptively evolved Escherichia coli lacking CRP reveal molecular mechanisms that define growth physiology
|
24 |
|
Ankita Pal | Dec 31, 2021 |