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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing			TSV
GSE234185	Long-term multi-modal recording reveals epigenetic adaptation routes in dormant breast cancer cells	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Homo sapiens	491	TSV	Heena Dhiman	Apr 16, 2024
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE193714	DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières Syndrome astrocytes	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	24	MTX TSV VCF	Monah Abou Alezz	Jan 17, 2022
GSE190395	Genetic correlates in patients with Philadelphia chromosome-positive acute lymphoblastic leukemia treated with Hyper-CVAD plus dasatinib or ponatinib	Genome variation profiling by high throughput sequencing	Homo sapiens	95	TSV SRA Run Selector	Yuya Sasaki	Dec 10, 2021
GSE190397	Philadelphia chromosome (Ph)-positive acute lymphoblastic leukemia (ALL)	Genome variation profiling by array SNP genotyping by SNP array Genome variation profiling by high throughput sequencing	Homo sapiens	194	TSV	Yuya Sasaki	Dec 10, 2021
GSE165877	Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	42	BW TDF TSV WIG SRA Run Selector	Cheng Zhao	Aug 11, 2021
GSE161420	Divergent resistance mechanisms to HER2-targeted therapies in breast cancer (bulkRNA-Seq and Exome-Seq)	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	60	TSV TXT SRA Run Selector	Kornelia Polyak	Apr 21, 2021
GSE144019	Disruption of the MSL complex inhibits tumor maintenance by exacerbating chromosomal instability	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	55	TSV TXT SRA Run Selector	Paola Scaffidi	Jan 31, 2021
GSE137542	Leukemias from NP23-NHD13 double transgenic mice - WES study	Genome variation profiling by high throughput sequencing	Mus musculus	18	TSV SRA Run Selector	Yuelin Jack Zhu	Sep 10, 2020
GSE148482	Stimulation of oncogene-specific tumor infiltrating T-cells through combined vaccine and alpha-PD1 enable sustained anti-tumor responses against established HER2 breast cancer (BC)	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	70	CSV TSV TXT VCF	Zachary Conrad Hartman	Apr 11, 2020
GSE131977	Acquired resistance to combined BET and CDK4/6 inhibition in triple-negative breast cancer [Barcode]	Genome variation profiling by high throughput sequencing	Homo sapiens	174	TSV SRA Run Selector	Kornelia Polyak	Apr 08, 2020
GSE131986	Acquired resistance to combined BET and CDK4/6 inhibition in triple-negative breast cancer	Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	223	TSV	Kornelia Polyak	Apr 08, 2020
GSE136560	Molecular basis of cisplatin resistance in testicular germ cell tumors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	10	CSV TSV TXT SRA Run Selector	Jan Stuchly	Aug 29, 2019
GSE113869	Rpd3L Contributes to the DNA Damage Sensitivity of Saccharomyces cerevisiae Checkpoint Mutants	Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae	100	TSV SRA Run Selector	Belén Gómez-González	Feb 27, 2019
GSE116661	RNA polymerase I activators count and adjust ribosomal RNA gene copy number	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae BY4741	25	BEDGRAPH TSV XLS	Tetsushi Iida	Jan 03, 2019
GSE120839	Single-cell virus sequence of influenza infections that trigger innate immunity	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens Influenza A virus (A/WSN/1933(H1N1))	2	FASTA MTX TSV SRA Run Selector	Jesse D Bloom	Oct 05, 2018
GSE104019	Telomere repeats induce domains of H3K27 methylation in Neurospora	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Neurospora crassa	34	BEDPE TDF TSV TXT SRA Run Selector	Eric Selker	Dec 29, 2017
GSE101989	Deletion of 11q in neuroblastomas drives sensitivity to PARP inhibition [SEQ]	Genome variation profiling by high throughput sequencing	Homo sapiens	24	TSV SRA Run Selector	Jaime Font de Mora	Jul 28, 2017
GSE101990	Deletion of 11q in neuroblastomas drives sensitivity to PARP inhibition	Genome variation profiling by SNP array Genome variation profiling by high throughput sequencing	Homo sapiens	48	CEL CYCHP TSV	Jaime Font de Mora	Jul 28, 2017
GSE92966	The role of Lgr5 intestinal cancer stem cells in tumour initiation, progression and metastasis	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Mus musculus	48	TSV TXT VCF	Robert Piskol	Mar 29, 2017