GEO Browser - GEO

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36 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Bifidobacterium longum
GSE164163	Analysis of EPS structure and transcriptome expression difference of Bifidobacterium longum W13 and W13R	Expression profiling by high throughput sequencing	Bifidobacterium longum	6	TXT SRA Run Selector	Tang jiao	Mar 17, 2021
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6	TXT	Evelyne Forano	Oct 01, 2019
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE87697	RNA sequencing of Bifidobacterium longum subsp. longum SC596 in response to various substrates	Expression profiling by high throughput sequencing	Bifidobacterium longum	18	TXT SRA Run Selector	Danielle G Lemay	Oct 08, 2016
GSE65320	Next generation sequencing based transcriptomic analysis of oxidative stress response in Bifidobacterium longum BBMN68	Expression profiling by high throughput sequencing	Bifidobacterium longum	3	TXT SRA Run Selector	Fanglei Zuo	Jan 26, 2016
GSE46446	Next generation sequencing based transcriptomic analysis of bile stress response in Bifidobacterium longum BBMN68	Expression profiling by high throughput sequencing	Bifidobacterium longum	2	TXT SRA Run Selector	Haoran An	Jun 29, 2014
GSE45641	Intestine-adapted bacterial symbiont response to polysaccharide rich and polysaccharide deficient diets in mice lacking fucosyltransferase-2	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	18	CEL	Angela M Marcobal	Apr 21, 2014
GSE38534	Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bifidobacterium longum Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	12	CEL	Michaela Anne TerAvest	Jan 01, 2014
GSE44709	Expression data from Bifidobacterium longum strains exposed to hydrogen peroxide stress	Expression profiling by array	Bifidobacterium animalis subsp. lactis Bifidobacterium longum Bifidobacterium longum NCC2705	24	CEL	Taylor S Oberg	Feb 28, 2013
GSE26772	In vitro transcriptional profiling of Bacteroides thetaiotaomicron in lactose, galactose and human milk oligosaccharides	Expression profiling by array Third-party reanalysis	Bacteroides thetaiotaomicron Bifidobacterium longum	8	CEL TXT	Angela M Marcobal	Jan 01, 2013
GSE18474	A novel metabolic monitoring system identified nutrition-mediated microbial interactions	Expression profiling by array	Bifidobacterium longum Escherichia coli	8	CEL	Shinji Fukuda	Oct 01, 2011
GSE25415	Transcription analysis of wild-type and chuR Bacteroides thetaiotaomicron genes in the mouse cecum	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bifidobacterium animalis Bifidobacterium longum Lacticaseibacillus casei Lactobacillus delbrueckii Streptococcus thermophilus	12	CEL	Eric Charles Martens	Jan 01, 2011
GSE16039	Bifidobacterium longum mutant	Expression profiling by array	Bifidobacterium longum Bifidobacterium longum NCC2705	3	TXT	Valeria Mozzetti	Mar 29, 2010
GSE14628	Bifidobacterium longum mutants and resistance to Heat-Shock	Expression profiling by array	Bifidobacterium longum Bifidobacterium longum NCC2705	24	TXT	Bernard Berger	Dec 21, 2009
GSE14592	Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont	Expression profiling by array	Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bifidobacterium longum	22	CEL	Eric Charles Martens	Jun 01, 2009
GSE14896	Physiological stability of Bifidobacterium longum NCC2705 under continuous culture conditions	Expression profiling by array	Bifidobacterium longum Bifidobacterium longum NCC2705	4	TXT	Valeria Mozzetti	Apr 30, 2009
GSE11944	Mucosal Glycan Foraging Enhances the Fitness and Transmission of a Saccharolytic Human Distal Gut Symbiont	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	21	CEL	Eric Charles Martens	Nov 21, 2008
GSE11953	Mucosal Glycan Foraging Enhances the Fitness and Transmission of a Saccharolytic Human Distal Gut Symbiont: ECF mutant	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	9	CEL	Eric Charles Martens	Nov 21, 2008
GSE11980	Glycan effect on Saccharolytic Human Distal Gut Symbiont, B. thetaiotaomicron	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bifidobacterium longum Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	48	CEL	Eric Charles Martens	Nov 21, 2008
GSE9019	Gene expression of Bacteroides thetaiotaomicron, in vivo with and without IgA 225.4	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	8	CEL	Daniel A Peterson	Dec 27, 2007