GEO Browser - GEO

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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Physcomitrium patens
GSE146607	Transcriptome analysis	Expression profiling by high throughput sequencing	Physcomitrium patens	10	XLSX TXT SRA Run Selector	Huiqing Yan	Jun 01, 2020
GSE181719	Transcriptome analysis of Physcomitrium wild type and ppdnmt2 protonemata under Mannitol stress	Expression profiling by high throughput sequencing	Physcomitrium patens	6	XLSX SRA Run Selector	Dr. Meenu Kapoor	Aug 06, 2024
GSE233927	Comparative analysis of nascent transcription among plant species	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Chlamydomonas reinhardtii Drosophila melanogaster Hordeum vulgare Physcomitrium patens Selaginella moellendorffii Zea mays	68	XLSX TXT BED	Sascha Duttke	Sep 28, 2023
GSE66467	Genome-wide transcriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	15	XLS TXT SRA Run Selector	Lihong Xiao	Feb 22, 2018
GSE66485	Genome-wide DNA methylation maps during rehydration in gametophores of Physcomitrella patens.	Methylation profiling by high throughput sequencing	Physcomitrium patens	5	XLS SRA Run Selector	Lihong Xiao	Feb 22, 2018
GSE66589	Genome-wide small RNAtranscriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	10	XLS TXT SRA Run Selector	Lihong Xiao	Feb 22, 2018
GSE19768	UV-B regulation of microRNAs in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Glycine max Gossypium hirsutum Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Solanum lycopersicum Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	2	TXT	Paula Casati	Oct 31, 2013
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	TXT GFF SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE20263	Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Brassica oleracea Brassica rapa Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	10	TXT	Anja Buhtz	Feb 24, 2010
GSE32928	Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens	Expression profiling by array	Physcomitrium patens	8	TXT	Martin-Timothy O'Donoghue	Jul 29, 2013
GSE33279	Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	6	TXT SRA Run Selector	Lihong Xiao	Dec 20, 2011
GSE36117	Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	4	TXT SRA Run Selector	Lihong Xiao	Feb 28, 2015
GSE36274	mRNA-seq of Physcomitrella protonema responding to 1 hr red light in wild type and the phytochrome-deficient mutant	Expression profiling by high throughput sequencing	Physcomitrium patens	4	TXT SRA Run Selector	Shih-Long Tu	May 08, 2012
GSE36301	Analysis of transcriptome in moss Physcomitrella patens CNGCb null mutant at 25 and 34 degrees C for 30 minutes [Unpublished data]	Expression profiling by array	Physcomitrium patens	8	TXT	Andrija Finka	Mar 06, 2012
GSE37694	Genome-wide expression profiling of PpABI1 disruptants	Expression profiling by array	Physcomitrium patens	26	TXT	Kenji KOMATSU	Jul 31, 2013
GSE44900	Small RNA genes of Physcomitrella patens	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	10	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015
GSE51416	small RNA-seq of Physcomitrella patens rdr mutants	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	3	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015
GSE51418	dsRNA-seq of Physcomitrella patens rdr mutants	Expression profiling by high throughput sequencing	Physcomitrium patens	3	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015
GSE51419	small RNA-seq of Physcomitrella patens small RNA mutants	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	30	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015
GSE51590	Differential expression of miRNAs in Brassica napus root following infection with Plasmodiophora brassicae	Non-coding RNA profiling by array	Brassica napus Cenchrus americanus Cenchrus ciliaris Hordeum vulgare Hordeum vulgare subsp. vulgare Ipomoea batatas Ipomoea nil Lactuca sativa Liriodendron tulipifera Lolium arundinaceum Lotus japonicus Lupinus luteus Malcolmia maritima Malus domestica Manihot esculenta Medicago truncatula Nasturtium officinale Nicotiana benthamiana Nicotiana sylvestris Nicotiana tabacum Nuphar advena Oenocarpus bataua Oryza barthii Oryza brachyantha Oryza nivara Oryza rufipogon Oryza sativa Panicum virgatum Peridictyon sanctum Persea americana Petunia x hybrida Phaseolus coccineus Phaseolus vulgaris Phleum pratense Physcomitrium patens Picea glauca Picea sitchensis Pinus taeda Populus tremula Populus tremula x Populus tremuloides Populus tremuloides Populus trichocarpa Populus trichocarpa x Populus deltoides Prunus armeniaca Prunus persica Prunus salicina Ricinus communis Rorippa indica Sorghum bicolor	4	TXT	Sanjay Gupta	Nov 28, 2013