GEO Browser - GEO

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403 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Solanum lycopersicum
GSE16401	tomato salt response	Expression profiling by array	Solanum lycopersicum	12	CEL CHP XLS	Wei Sun	Jun 01, 2010
GSE129197	slmp mutant in tomato leaf primordia	Expression profiling by high throughput sequencing	Solanum lycopersicum	3	CSV SRA Run Selector	Idan Efroni	May 01, 2019
GSE65964	sRNA profiling between the 7B-1 male-sterile tomato and its wild type in response to abiotic stress	Non-coding RNA profiling by high throughput sequencing	Solanum lycopersicum	2	CSV SRA Run Selector	Irina Mohorianu	Oct 01, 2015
GSE22236	microRNA-target RNA pairs revealed by Parallel analysis of RNA ends in Solanum lycopersicum	Non-coding RNA profiling by high throughput sequencing	Solanum lycopersicum	3	SRA Run Selector	Simon Moxon	Aug 29, 2012
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE243804	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	152	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE243806	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	160	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE8236	Wound response of LapA-silenced tomato leaves	Expression profiling by array	Solanum lycopersicum Solanum tuberosum	30	GPR	Jia Liu	Sep 01, 2007
GSE175963	Whole-genome transcriptome analysis of tomato and Arabidopsis roots in the shade	Expression profiling by high throughput sequencing	Arabidopsis thaliana Solanum lycopersicum	40	CSV SRA Run Selector	Ullas V. Pedmale	Aug 08, 2023
GSE70375	Whole genome tomato transcriptional response to tomato-adapted and non-adapted Tetranychus urticae herbivory	Expression profiling by array	Solanum lycopersicum	20	CEL	Vladimir Zhurov	Jul 20, 2015
GSE61075	Whole genome tomato transcriptional response to jasmonic acid treatment and Tetranychus urticae herbivory [def-1]	Expression profiling by array	Solanum lycopersicum	12	CEL TXT	Vladimir Zhurov	Jan 05, 2015
GSE61074	Whole genome tomato transcriptional response to Tetranychus urticae herbivory [Heinz1706]	Expression profiling by array	Solanum lycopersicum	21	CEL TXT	Vladimir Zhurov	Jan 05, 2015
GSE61076	Whole genome tomato transcriptional response to Tetranychus urticae herbivory	Expression profiling by array	Solanum lycopersicum	33	CEL	Vladimir Zhurov	Jan 05, 2015
GSE227740	Whole genome tomato transcriptional response to Tetranychus evansi herbivory.	Expression profiling by array	Solanum lycopersicum	6	CEL	Vladimir Zhurov	Jul 10, 2023
GSE156402	Vein and Intervein Drought RNAseq	Expression profiling by high throughput sequencing	Solanum lycopersicum	30	XLSX SRA Run Selector	aaron ogden	Oct 31, 2020
GSE246372	Various tomato cultivars display contrasting morphological and molecular responses to a chronic heat stress	Expression profiling by high throughput sequencing	Solanum lycopersicum	60	TXT	Anis Djari	Oct 31, 2023
GSE20720	Understanding the complexity of fruit ripening by transcriptome analysis of rin mutant fruit	Expression profiling by array	Solanum lycopersicum	18	CEL	arun k. sharma	Feb 29, 2012
GSE19768	UV-B regulation of microRNAs in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Glycine max Gossypium hirsutum Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Solanum lycopersicum Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	2	TXT	Paula Casati	Oct 31, 2013
GSE126430	Translational regulation contributes to the elevated CO2 response in two Solanum species	Expression profiling by high throughput sequencing Other	Solanum lycopersicum Solanum pennellii	512	CSV TXT SRA Run Selector	Siobhan Brady	Nov 26, 2019
GSE160907	Translation initiation landscape of tomato-infecting virus	Expression profiling by high throughput sequencing Other	Solanum lycopersicum	6	XLSX SRA Run Selector	Ming-Jung Liu	May 04, 2022