GEO Browser - GEO

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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Coprinopsis cinerea
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	XLS TXT TSV SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	TXT GFF SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE40722	5'-Serial Analysis of Gene Expression of the transcriptomes of Coprinopsis cinerea during fruiting body initiation	Expression profiling by high throughput sequencing	Coprinopsis cinerea	2	TXT SRA Run Selector	CHI KEUNG CHENG	Jan 10, 2013
GSE46963	Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP proteins in Coprinopsis cinerea [CMS-seq]	Methylation profiling by high throughput sequencing	Coprinopsis cinerea	7	TXT SRA Run Selector	Lukas Chavez	Dec 02, 2014
GSE58865	Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP proteins in Coprinopsis cinerea [RNA-seq]	Expression profiling by high throughput sequencing	Coprinopsis cinerea	4	TXT SRA Run Selector	Lukas Chavez	Dec 02, 2014
GSE18540	Comparison of C. cinerea vegetative dikaryotic to vegetative monokaryotic mycelia	Expression profiling by array	Coprinopsis cinerea	3	TIFF GPR	Claire Burns	Feb 01, 2010
GSE62427	A "developmental hourglass" in fungi	Expression profiling by array	Coprinopsis cinerea	10	PAIR CALLS	Xuanjin Cheng	Mar 01, 2015
GSE185551	Oxidized 5mC modifications in fungi	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Coprinopsis cinerea Laccaria bicolor	31	GTF COV	Kotryna Kvederaviciute	Jan 13, 2022
GSE245082	Snowball-like mushroom morphologies and a novel gene family required for fruiting body development	Expression profiling by high throughput sequencing	Coprinopsis cinerea	12	GTF FASTA CSV	Zsolt Merényi	Jan 26, 2024
GSE13731	The meiotic transcriptome of the basidomycete fungus Coprinopsis cinerea (Coprinus cinereus)	Expression profiling by array	Coprinopsis cinerea	24	GPR	Claire Burns	Feb 01, 2010
GSE20628	The dikaryon formation (mating) transcriptome of the basidomycete fungus Coprinopsis cinerea (Coprinus cinereus)	Expression profiling by array	Coprinopsis cinerea	12	GPR	Claire Burns	Jun 21, 2010
GSE37942	Comparison of gene expression during meiosis between wild-type and rad50-deficient strains of Coprinopsis cinerea	Expression profiling by array	Coprinopsis cinerea	20	GPR	Claire Burns	May 15, 2012
GSE37943	Comparison of gene expression during meiosis between wild-type and msh5-deficient strains of Coprinopsis cinerea	Expression profiling by array	Coprinopsis cinerea	24	GPR	Claire Burns	May 15, 2012
GSE37968	omparison of gene expression during meiosis between wild-type and deficient strains of Coprinopsis cinerea	Expression profiling by array	Coprinopsis cinerea	44	GPR	Claire Burns	May 15, 2012
GSE123178	Transcriptional profiling elucidates the essential role of glycogen synthase kinase 3 to fruiting body formation in Coprinopsis cinerea	Expression profiling by high throughput sequencing	Coprinopsis cinerea	12	SRA Run Selector FPKM_TRACKING	Kathy Chan	Apr 19, 2019
GSE125184	Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi [Coprinopsis cinerea]	Expression profiling by high throughput sequencing	Coprinopsis cinerea	29	SRA Run Selector CSV	Laszlo G. Nagy	Mar 16, 2019
GSE125200	Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi	Expression profiling by high throughput sequencing	Coprinopsis cinerea Lentinus tigrinus Phanerodontia chrysosporium Rickenella mellea Schizophyllum commune	92	CSV	Laszlo G. Nagy	Mar 16, 2019
GSE185550	5mC oxidation products in the nucleic acids of the Basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea	Methylation profiling by high throughput sequencing	Coprinopsis cinerea Laccaria bicolor	27	SRA Run Selector COV	Kotryna Kvederaviciute	Jan 16, 2022
GSE46965	Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP proteins in Coprinopsis cinerea	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Coprinopsis cinerea	11		Lukas Chavez	Dec 02, 2014
GSE99617	Blue light exposure and nutrient conditions influence the expression of genes involved in simultaneous hyphal knot formation in Coprinopsis cinerea.	Expression profiling by SAGE	Coprinopsis cinerea	4		Yuichi Sakamoto	Dec 03, 2018