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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Shigella flexneri
GSE216921	Detection of Q-modification in RNAs from S. pombe and S. flexneri via reverse transcription using RT-KTq I614Y (Q-MaP-Seq)	Expression profiling by high throughput sequencing Other	Schizosaccharomyces pombe Shigella flexneri	30	XLSX	Ann E. Ehrenhofer-Murray	Mar 15, 2023
GSE183515	Biofilm Formation and Virulence of Shigella flexneri is Modulated by pH	Expression profiling by high throughput sequencing	Shigella flexneri	6	TXT SRA Run Selector	Thaddeus Stappnbeck	Sep 09, 2021
GSE182079	A chromatin immunoprecipitation database for prokarytic organisms	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Klebsiella pneumoniae Pseudomonas putida Salmonella enterica Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Shigella flexneri Staphylococcus aureus Yersinia pseudotuberculosis	102	GFF	Ye Gao	Aug 17, 2021
GSE181770	A chromatin immunoprecipitation database for prokarytic organisms [fur]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Salmonella enterica Shigella flexneri Yersinia pseudotuberculosis	14	GFF SRA Run Selector	Ye Gao	Aug 15, 2021
GSE152295	RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections	Expression profiling by high throughput sequencing	Achromobacter xylosoxidans Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Borreliella burgdorferi Burkholderia pseudomallei Campylobacter jejuni Enterococcus faecalis Escherichia coli Francisella tularensis Haemophilus influenzae Helicobacter pylori Klebsiella pneumoniae Legionella pneumophila Listeria monocytogenes Mycobacterium tuberculosis Neisseria gonorrhoeae Neisseria meningitidis Pseudomonas aeruginosa Salmonella enterica Shigella flexneri Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes Streptococcus suis Vibrio cholerae Yersinia pseudotuberculosis	1122	TXT SRA Run Selector	Kemal Avican	Apr 23, 2021
GSE123435	RNA-Seq analysis of the T3SA regulon in Shigella flexneri reveals two new chromosomal genes upregulated in the on-state	Expression profiling by high throughput sequencing	Shigella flexneri	2	CSV SRA Run Selector	François-Xavier Campbell-Valois	Apr 06, 2019
GSE107365	Role of PhoPQ TCS plays in Shigella virulence	Expression profiling by array	Shigella flexneri	12	TXT	Zhiwei Lin	Nov 28, 2017
GSE7478	cDNA-Shigella flexnerri- Furazolidone	Expression profiling by array	Shigella flexneri	18	GPR	Hua Fu	Mar 10, 2015
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29	XLSX	Jennie Hamilton	Feb 28, 2015
GSE49939	Shigella flexneri ntrBC and nac mutant expression analysis	Expression profiling by array	Escherichia coli K-12 Shigella flexneri	9	PAIR	Georgiana Purdy	May 09, 2014
GSE32978	RNA polymerase inhibitor	Expression profiling by array	Shigella flexneri	36	GPR	Hua Fu	Mar 21, 2012
GSE16714	Transcriptional Profile of the Shigella flexneri Response to Berberine	Expression profiling by array	Shigella flexneri	3	GPR	Hua Fu	Mar 10, 2012
GSE27326	Comparative Genomic Hybridization of E. coli and Shigella species to determine the relatedness of isolates from Neobladders	Genome variation profiling by array	Escherichia coli Shigella Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei	30	CEL	David A Rasko	Jul 25, 2011
GSE16535	The expression profiles of log-phase and stationary-phase cells of Shigella flexneri grown at 30 degrees and 37 degrees Celsius	Expression profiling by array	Shigella flexneri Shigella flexneri 2a str. 2457T	4	PAIR	Li Zhu	Jun 02, 2010
GSE12534	The expression profiles analysis of shigella flexneri incubated in rabbit ileum	Expression profiling by array	Shigella flexneri Shigella flexneri 2a str. 2457T	2	PAIR	Li Zhu	May 22, 2009
GSE12535	The expression profiles analysis of a virulence plasmid-cured strain of shigella flexneri	Expression profiling by array	Shigella flexneri Shigella flexneri 2a str. 2457T	4	PAIR	Li Zhu	Dec 22, 2008
GSE5212	Shigella CGH	Genome variation profiling by array	Escherichia coli Escherichia coli K-12 Shigella boydii Shigella boydii Sb227 Shigella dysenteriae Shigella dysenteriae Sd197 Shigella flexneri Shigella flexneri 2a str. 301 Shigella sonnei Ss046	117		Junping Peng	Jul 01, 2007