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100 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Aedes aegypti
GSE95797	De novo assembly of Aedes aegypti using Hi-C yields chromosome-length scaffolds	Third-party reanalysis Other	Aedes aegypti Culex quinquefasciatus Homo sapiens	3	FASTA TXT SRA Run Selector	Olga Dudchenko	Mar 24, 2017
GSE113256	Aedes aegypti strain:LVP_AGWG (yellow fever mosquito)	Other	Aedes aegypti	3	BED FASTA HIC TXT SRA Run Selector	Olga Dudchenko	Aug 23, 2018
GSE157085	Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons	Other	Acanthochromis polyacanthus Acipenser ruthenus Acyrthosiphon pisum Aedes aegypti Amphiprion ocellaris Amphiprion percula Anabarilius grahami Anabas testudineus Austrofundulus limnaeus Chrysemys picta Crocodylus porosus Culex quinquefasciatus Cyprinus carpio Erpetoichthys calabaricus Fundulus heteroclitus Gallus gallus Hippocampus comes Hofstenia miamia Homo sapiens Hucho hucho Kryptolebias marmoratus Labeo rohita Latimeria chalumnae Locusta migratoria Mola mola Nematostella vectensis Paramormyrops kingsleyae Petromyzon marinus Rhipicephalus appendiculatus Rhizophagus irregularis Rhodnius prolixus Salarias fasciatus Salmo salar Sparus aurata Sphaeramia orbicularis synthetic construct	258	TXT	Isaac Yellan	Feb 09, 2021
GSE157168	Argonaute-CLIP delineates versatile, functional RNAi networks in Aedes aegypti, a major vector of human viruses	Other Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	97	TXT SRA Run Selector	Kathryn Rozen-Gagnon	Sep 04, 2020
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE32247	Production of Virus-Derived Ping-Pong-Dependent Piwi-like RNAs in the Mosquito Soma	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Aedes albopictus	20	PDF TXT XLS SRA Run Selector	Kevin Myles	Jan 06, 2012
GSE33595	The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Drosophila melanogaster	8	BAM TXT SRA Run Selector	Peter Arensburger	Mar 18, 2014
GSE35161	Sindbis virus induces the production of a novel class of endogenous siRNAs in Aedes aegypti mosquitoes	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	3	TXT SRA Run Selector	Zach N. Adelman	Apr 01, 2012
GSE46204	Cooler temperatures destabilize RNA interference and increase susceptibility of disease vector mosquitoes to viral infection	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Aedes albopictus	8	XLSX SRA Run Selector	Kevin Myles	Aug 13, 2013
GSE55210	Wolbachia infection modifies the profile, shuttling and structure of microRNAs in a mosquito cell line	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	4	TXT SRA Run Selector	Kayvan Etebari	Feb 22, 2014
GSE59516	Post-transcriptional microRNA modifications in the Dengue mosquito vector, Aedes aegypti	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	6	CSV FASTA SRA Run Selector	Kayvan Etebari	Nov 05, 2015
GSE65070	The hub protein Loqs connects the miRNA and endo-siRNA pathways in mosquitos	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	12	TXT SRA Run Selector	Zach Adelman	Apr 08, 2015
GSE80691	The yellow fever virus capsid protein is a potent suppressor of RNA silencing that binds double stranded RNA.	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	6	XLSX SRA Run Selector	Kevin Myles	Jan 04, 2017
GSE84030	Larval application of sodium channel homologous dsRNA restores pyrethroid insecticide susceptibility in a resistant adult mosquito population	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	2	TXT SRA Run Selector	Eyal Maori	Jul 06, 2016
GSE93345	Small RNA and AGO1 CLIP-seq libraries of female Aedes aegypti fat body	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Aedes aegypti	7	XLSX SRA Run Selector	Alexander Raikhel	Mar 06, 2017
GSE97523	Zika virus alters the microRNA expression profile and elicits an RNAi response in Aedes aegpyti mosquitoes	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	18	TXT SRA Run Selector	Grant Hughes	Jul 11, 2017
GSE99498	Identification and characterization of miRNAs expressed in the corpora allata of Aedes aegypti	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	9	TXT SRA Run Selector	Kayvan Etebari	Apr 19, 2018
GSE100917	Understanding the role of microRNAs in the interaction of Aedes aegypti mosquitoes with an insect-specific flavivirus	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	36	XLSX SRA Run Selector	Kayvan Etebari	Jul 08, 2017
GSE101956	Multifaceted Functional Implications of an Endogenously Expressed tRNA Fragment in Vector Mosquito Aedes aegypti	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	40	TXT SRA Run Selector	Susanta K. Behura	Jan 03, 2018
GSE125520	Zika virus infection induces RNAi-mediated antiviral immunity in human neural progenitors and brain organoids	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Homo sapiens	5	TXT SRA Run Selector	xi zhou	Apr 15, 2019