GEO Browser - GEO

Series

Samples

Platforms

DataSets

144 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus tropicalis
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE118382	Xenopus hybrids provide insight into cell and organism size control	Expression profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	8	FA TXT SRA Run Selector	Taejoon Kwon	Dec 19, 2018
GSE19173	Xenopus egg small RNA associated with Y12 antibody	Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	1	SRA Run Selector	Nicolas Robine	Jan 04, 2010
GSE63228	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis	11	TXT SRA Run Selector	NELSON LAU	Nov 10, 2015
GSE74919	Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline.	Expression profiling by high throughput sequencing	Xenopus tropicalis	26	TXT SRA Run Selector	Zhihua Jiang	Jul 22, 2016
GSE127778	Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis]	Methylation profiling by high throughput sequencing	Xenopus tropicalis	5	CSV SRA Run Selector	Rui Zhang	Feb 27, 2022
GSE127780	Whole transcriptome bisufilte sequencing for multiple species	Methylation profiling by high throughput sequencing	Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Xenopus laevis Xenopus tropicalis	67	CSV	Rui Zhang	Feb 27, 2022
GSE180671	Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos	Expression profiling by high throughput sequencing	Xenopus tropicalis	13	CSV SRA Run Selector	Richard Harland	Jul 24, 2021
GSE134545	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Expression profiling by high throughput sequencing	Xenopus tropicalis	16	GTF SRA Run Selector	Stéphane REYNAUD	Jul 20, 2019
GSE150911	Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	Expression profiling by high throughput sequencing	Xenopus tropicalis	21	TAB SRA Run Selector	Stéphane REYNAUD	Jan 01, 2021
GSE179257	Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis.	Expression profiling by high throughput sequencing	Xenopus tropicalis	20	TXT SRA Run Selector	Stéphane REYNAUD	Oct 30, 2021
GSE89165	Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis.	Expression profiling by high throughput sequencing	Xenopus tropicalis	4	TXT SRA Run Selector	Zhihua Jiang	Oct 24, 2018
GSE161600	Uncovering the mesendoderm gene regulatory network through multi-omic data integration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	19	NARROWPEAK TXT SRA Run Selector	Kitt D. Paraiso	Mar 30, 2022
GSE107424	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	Expression profiling by high throughput sequencing	Xenopus tropicalis	15	GTF TXT SRA Run Selector	Rita Monteiro	May 04, 2018
GSE205498	Transcriptomic evolution across bilaterian tissues	Expression profiling by high throughput sequencing	Aedes aegypti Blattella germanica Bombyx mori Branchiostoma lanceolatum Callorhinchus milii Cloeon dipterum Danio rerio Drosophila melanogaster Episyrphus balteatus Monodelphis domestica Octopus bimaculoides Strigamia maritima Strongylocentrotus purpuratus Tribolium castaneum Xenopus tropicalis	89	TSV	Federica Mantica	Oct 12, 2022
GSE72657	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	14	BW TXT SRA Run Selector	Stefan Hoppler	Apr 25, 2016
GSE158331	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	TXT SRA Run Selector	Anneke Dixie Kakebeen	Sep 23, 2020
GSE161718	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT SRA Run Selector	Ryan Dale	Jul 19, 2022
GSE161714	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Expression profiling by high throughput sequencing	Xenopus tropicalis	12	TXT SRA Run Selector	Ryan Dale	Mar 31, 2021