GEO Browser - GEO

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165 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Pan troglodytes
GSE270272	Resolving the three-dimensional interactome of Human Accelerated Regions during human and chimpanzee neurodevelopment	Expression profiling by high throughput sequencing Other	Homo sapiens Pan troglodytes	51	BED BW MTX RESULTS TSV TXT	Atreyo Pal	Jun 25, 2024
GSE232949	Cell type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	33		Hunter Fraser	May 23, 2023
GSE232948	Cell type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells [RNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	25	TXT	Hunter Fraser	May 23, 2023
GSE232947	Cell type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	8	TXT	Hunter Fraser	May 23, 2023
GSE230441	Isoform-specific translational control is evolutionarily conserved in primates	Other	Homo sapiens Pan troglodytes Pongo abelii	30	GTF TSV	Jeremy Sanford	Apr 30, 2024
GSE223748	Mammalian Methylation Consortium	Methylation profiling by array	Acinonyx jubatus Acomys cahirinus Addax nasomaculatus Aepyceros melampus Alexandromys mongolicus Alexandromys oeconomus Alticola barakshin Alticola semicanus Amblysomus hottentotus Antidorcas marsupialis Antrozous pallidus Aonyx cinereus Aplodontia rufa Apodemus agrarius Apodemus peninsulae Apodemus sylvaticus Apodemus uralensis Artibeus jamaicensis Arvicanthis niloticus Asellia tridens Atelerix albiventris Balaena mysticetus Balaenoptera borealis Balaenoptera musculus Bathyergus janetta Bathyergus suillus Blarina brevicauda Bos taurus Bradypus variegatus Cabassous unicinctus Caenolestes fuliginosus Callithrix geoffroyi Callithrix jacchus Callospermophilus lateralis Callospermophilus saturatus Canis latrans Canis lupus familiaris Capra hircus Capreolus capreolus Carollia perspicillata Castor canadensis Cavia aperea Cavia porcellus Cavia tschudii Cephalorhynchus commersonii Cephalorhynchus hectori hectori Cephalorhynchus hectori maui Ceratotherium simum simum Cervus canadensis Cervus elaphus Chaetophractus villosus Cheirogaleus medius Chinchilla lanigera Chlorocebus sabaeus Choloepus didactylus Choloepus hoffmanni Chrysocyon brachyurus Clethrionomys gapperi Condylura cristata Connochaetes taurinus albojubatus Cricetomys gambianus Cricetulus barabensis Cricetulus griseus Cricetulus longicaudatus Crocidura cyanea Crocuta crocuta Cryptomys hottentotus Ctenomys lewisi Ctenomys opimus Ctenomys steinbachi Cuniculus paca Cyclopes didactylus Cynopterus brachyotis Dasypus novemcinctus Daubentonia madagascariensis Delphinapterus leucas Delphinus delphis Dendrohyrax arboreus Desmodus rotundus Diceros bicornis Didelphis marsupialis Didelphis virginiana Dipus sagitta Dromiciops gliroides Echinops telfairi Eidolon helvum Elephantulus edwardii Elephantulus myurus Elephas maximus Ellobius talpinus Enhydra lutris Eozapus setchuanus Eptesicus fuscus Equus asinus somalicus Equus caballus Equus grevyi Equus quagga Erethizon dorsatum Erinaceus europaeus Eudorcas thomsonii Eulemur albifrons Eulemur coronatus Eulemur flavifrons Eulemur fulvus Eulemur fulvus collaris Eulemur macaco Eulemur mongoz Eulemur rubriventer Eulemur rufus Eulemur sanfordi Eumetopias jubatus Felis catus Fukomys damarensis Galago moholi Galea musteloides Galea musteloides leucoblephara Galeopterus variegatus Gazella leptoceros Georychus capensis Gerbillus cheesmani Gerbillus nanus Giraffa camelopardalis Glaucomys sabrinus Globicephala macrorhynchus Gorilla gorilla Hapalemur griseus Hemicentetes semispinosus Hemiechinus auritus Heterocephalus glaber Hipposideros ruber Hippotragus equinus Hippotragus niger Homo sapiens Hydrochoerus hydrochaeris Hylomys suillus Hystrix cristata Ictidomys tridecemlineatus Jaculus jaculus Kobus megaceros Lagenorhynchus albirostris Lagenorhynchus obliquidens Lasiopodomys brandtii Lasiopodomys gregalis Lasiopodomys mandarinus Lemur catta Leptonycteris yerbabuenae Lepus americanus Lepus californicus Litocranius walleri Loris tardigradus Loxodonta africana Lycaon pictus Lynx rufus Macaca mulatta Macropus fuliginosus Macropus giganteus Macroscelides proboscideus Marmota flaviventris Marmota monax Martes americana Megaptera novaeangliae Meriones libycus Meriones rex Meriones unguiculatus Mesocricetus auratus Mesoplodon bidens Micaelamys namaquensis Microcebus murinus Microgale cowani Microgale drouhardi Microgale thomasi Microtus fortis Microtus guentheri Microtus maximowiczii Microtus ochrogaster Microtus pennsylvanicus Microtus richardsoni Mirza zaza Molossus molossus Monodelphis domestica Mops pumilus Muntiacus vaginalis Mus minutoides Mus musculus Mustela altaica Mustela frenata Mustela putorius furo Myocastor coypus Myodes rufocanus Myotis brandtii Myotis evotis Myotis lucifugus Myotis myotis Myotis nattereri Myotis thysanodes Myotis vivesi Myotis yumanensis Nanger dama Nanger granti Nanger soemmerringii Nannospalax ehrenbergi Nannospalax galili Napaeozapus insignis Neogale vison Neomys fodiens Neophoca cinerea Neotoma cinerea Nesogale talazaci Neurotrichus gibbsii Notamacropus agilis Notamacropus eugenii Notamacropus rufogriseus Nothocricetulus migratorius Nyctalus noctula Nycticebus coucang Nycticeius humeralis Ochotona alpina Ochotona dauurica Ochotona hyperborea Ochotona pallasi Ochotona princeps Ochotona rufescens Odobenus rosmarus divergens Odocoileus virginianus Okapia johnstoni Ondatra zibethicus Orcinus orca Oreamnos americanus Orientallactaga sibirica Ornithorhynchus anatinus Orycteropus afer Oryctolagus cuniculus Osphranter robustus Osphranter rufus Otolemur crassicaudatus Ovis aries Pan troglodytes Panthera leo Panthera tigris Papio hamadryas Paraechinus aethiopicus Paraechinus hypomelas Parascalops breweri Perodicticus potto Peromyscus californicus Peromyscus eremicus Peromyscus leucopus Peromyscus maniculatus Peromyscus polionotus Phascolarctos cinereus Phoca groenlandica Phoca vitulina Phocoena phocoena Phodopus campbelli Phodopus roborovskii Phyllostomus discolor Phyllostomus hastatus Physeter catodon Pipistrellus pipistrellus Plecotus auritus Pongo pygmaeus Procavia capensis Propithecus coquereli Propithecus diadema Propithecus tattersalli Pteropus giganteus Pteropus hypomelanus Pteropus poliocephalus Pteropus pumilus Pteropus rodricensis Pteropus vampyrus Puma concolor Rattus norvegicus Rattus rattus Rhabdomys pumilio Rhinoceros unicornis Rhinolophus alcyone Rhinolophus ferrumequinum Rhinopoma hardwickii Rhombomys opimus Rhynchonycteris naso Rousettus aegyptiacus Saccopteryx bilineata Sarcophilus harrisii Scalopus aquaticus Scapanus orarius Sciurus carolinensis Sciurus niger Setifer setosus Smutsia temminckii Sorex caecutiens Sorex cinereus Sorex hoyi Sorex isodon Sorex minutissimus Sorex palustris Sorex roboratus Sorex trowbridgii Sorex tundrensis Sorex vagrans Steno bredanensis Suncus murinus Suncus varilla Suricata suricatta Sus scrofa Sus scrofa domesticus Sylvilagus audubonii Sylvilagus bachmani Sylvilagus brasiliensis Sylvilagus floridanus Sylvilagus nuttallii Tachyglossus aculeatus Tadarida brasiliensis Talpa occidentalis Tamandua mexicana Tamandua tetradactyla Tamias amoenus Tamias striatus Tamias townsendii Tamiasciurus douglasii Tamiasciurus hudsonicus Tenrec ecaudatus Tolypeutes matacus Trachypithecus francoisi Tragelaphus angasii Tragelaphus eurycerus Tragelaphus imberbis Tragelaphus oryx Tragelaphus spekii Tragelaphus strepsiceros Trichechus manatus Tupaia belangeri Tupaia gracilis Tupaia longipes Tupaia tana Tursiops aduncus Tursiops truncatus Urocitellus columbianus Ursus americanus Varecia rubra Varecia variegata Vicugna pacos Vombatus ursinus Vulpes vulpes Xanthonycticebus pygmaeus Zalophus californianus Zapus princeps	15043	CSV DOCX IDAT	Steve Horvath	Aug 05, 2023
GSE218199	Comparative analysis of innate immune responses to viral infection among animals	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes Rousettus aegyptiacus	16	H5	Kei Sato	Jan 18, 2023
GSE212297	Comparative landscape of genetic dependencies in human and chimpanzee stem cells	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	36	TXT	Richard She	Jul 24, 2023
GSE201516	The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	22	CSV GTF H5SEURAT MTX VCF	Yoav Gilad	Apr 11, 2023
GSE201298	ChIP-seq and Transcriptome analysis of human and chimpanzee iPS cells	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	24	TDF TXT	Kenji Ichiyanagi	Oct 26, 2022
GSE201297	TE-derived small RNA analysis of human and chimpanzee iPS cells	Non-coding RNA profiling by high throughput sequencing	Homo sapiens Pan troglodytes	4	TXT	Kenji Ichiyanagi	Oct 26, 2022
GSE201296	Transcriptome analysis of human and chimpanzee iPS cells	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	4	TXT	Kenji Ichiyanagi	Oct 26, 2022
GSE201295	ChIP-seq analysis of human and chimpanzee iPS cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	16	TDF	Kenji Ichiyanagi	Oct 26, 2022
GSE192774	Molecular features driving cellular and regulatory complexity of human brain evolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	24		Genevieve Konopka	Apr 26, 2023
GSE192773	Molecular features driving cellular and regulatory complexity of human brain evolution [RNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	12	MTX RDS TXT XLSX	Genevieve Konopka	Apr 26, 2023
GSE192772	Molecular features driving cellular and regulatory complexity of human brain evolution [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	12	MTX RDS TXT XLSX	Genevieve Konopka	Apr 26, 2023
GSE190489	High-throughput muscle fiber typing from RNA sequencing data	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	2	TXT SRA Run Selector	Nikolay Oskolkov	Jul 06, 2022
GSE189347	Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	45	BW MTX NARROWPEAK TSV	Marco Trizzino	Nov 24, 2021
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE185643	Single-cell RNA sequencing data of stem cell-derived microfluidic human embryoids, NODAL-KO human embryoids and chimpanzee embryoids	Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	7	RD SRA Run Selector	Yi Zheng	Oct 13, 2021