GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE186958
Query DataSets for GSE186958
Status
Public on Nov 01, 2021
Title
Chromatin structure dynamics during human cardiomyocyte differention
Organisms
Callithrix jacchus
;
Pan paniscus
;
Pan troglodytes
;
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31427791
,
36817700
Submission date
Nov 01, 2021
Last update date
Jun 02, 2023
Contact name
Bing Ren
E-mail(s)
biren@ucsd.edu
Organization name
Ludwig Institute for Cancer Research
Street address
9500 Gilman Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platforms (5)
Less...
More...
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL23423
Illumina HiSeq 4000 (Pan troglodytes)
GPL26353
Illumina HiSeq 4000 (Pan paniscus)
GPL26566
Illumina HiSeq 4000 (Callithrix jacchus)
Samples (115)
Less...
More...
GSM3262956
day00.HiC.Rep1
GSM3262957
day00.HiC.Rep2
GSM3262958
day02.HiC.Rep1
GSM3262959
day02.HiC.Rep2
GSM3262960
day05.HiC.Rep1
GSM3262961
day05.HiC.Rep2
GSM3262962
day07.HiC.Rep1
GSM3262963
day07.HiC.Rep2
GSM3262964
day15.HiC.Rep1
GSM3262965
day15.HiC.Rep2
GSM3262966
day80.HiC.Rep1
GSM3262967
day80.HiC.Rep2
GSM3262968
day00.RNA.Rep1
GSM3262969
day00.RNA.Rep2
GSM3262970
day02.RNA.Rep1
GSM3262971
day02.RNA.Rep2
GSM3262972
day05.RNA.Rep1
GSM3262973
day05.RNA.Rep2
GSM3262974
day07.RNA.Rep1
GSM3262975
day07.RNA.Rep2
GSM3262976
day15.RNA.Rep1
GSM3262977
day15.RNA.Rep2
GSM3262978
day80.RNA.Rep1
GSM3262979
day80.RNA.Rep2
GSM3262992
day00.H3K27ac.Rep1
GSM3262993
day00.H3K27ac.Rep2
GSM3262994
day02.H3K27ac.Rep1
GSM3262995
day02.H3K27ac.Rep2
GSM3262996
day05.H3K27ac.Rep1
GSM3262997
day05.H3K27ac.Rep2
GSM3262998
day07.H3K27ac.Rep1
GSM3262999
day07.H3K27ac.Rep2
GSM3263000
day15.H3K27ac.Rep1
GSM3263001
day15.H3K27ac.Rep2
GSM3263002
day80.H3K27ac.Rep1
GSM3263003
day80.H3K27ac.Rep2
GSM3263052
day00.Input.Batch1.Rep1
GSM3263053
day00.Input.Batch1.Rep2
GSM3263054
day02.Input.Batch1.Rep1
GSM3263055
day02.Input.Batch1.Rep2
GSM3263056
day05.Input.Batch1.Rep1
GSM3263057
day05.Input.Batch1.Rep2
GSM3263058
day07.Input.Batch1.Rep1
GSM3263059
day07.Input.Batch1.Rep2
GSM3263060
day15.Input.Batch1.Rep1
GSM3263061
day15.Input.Batch1.Rep2
GSM3263062
day80.Input.Batch1.Rep1
GSM3263063
day80.Input.Batch1.Rep2
GSM3263064
day00.CTCF.Rep1
GSM3263065
day00.CTCF.Rep2
GSM3263066
day02.CTCF.Rep1
GSM3263067
day02.CTCF.Rep2
GSM3263068
day05.CTCF.Rep1
GSM3263069
day05.CTCF.Rep2
GSM3263070
day07.CTCF.Rep1
GSM3263071
day07.CTCF.Rep2
GSM3263072
day15.CTCF.Rep1
GSM3263073
day15.CTCF.Rep2
GSM3263074
day80.CTCF.Rep1
GSM3263075
day00.Input.Batch2.Rep1
GSM3263076
day00.Input.Batch2.Rep2
GSM3263077
day02.Input.Batch2.Rep2
GSM3263078
day05.Input.Batch2.Rep1
GSM3263079
day05.Input.Batch2.Rep2
GSM3263080
day07.Input.Batch2.Rep1
GSM3263081
day07.Input.Batch2.Rep2
GSM3263082
day15.Input.Batch2.Rep1
GSM3263083
day15.Input.Batch2.Rep2
GSM3263084
day80.Input.Batch2.Rep1
GSM3263085
day00.ctrl.HiC.Rep1
GSM3263086
day00.ctrl.HiC.Rep2
GSM3263087
day00.HERV1.KO.HiC.Rep1
GSM3263088
day00.HERV1.KO.HiC.Rep2
GSM3263089
day00.HERV2.KO.HiC.Rep1
GSM3263090
day00.HERV2.KO.HiC.Rep2
GSM3263091
day00.ctrl.RNA.Rep1
GSM3263092
day00.ctrl.RNA.Rep2
GSM3263093
day00.HERV1.KO.RNA.Rep1
GSM3263094
day00.HERV1.KO.RNA.Rep2
GSM3263095
day00.HERV2.KO.RNA.Rep1
GSM3263096
day00.HERV2.KO.RNA.Rep2
GSM3734950
day00.HERV1.CRISPRi.HiC.Rep1
GSM3734951
day00.HERV1.CRISPRi.HiC.Rep2
GSM3734952
day00.HERV2.CRISPRi.HiC.Rep1
GSM3734953
day00.HERV2.CRISPRi.HiC.Rep2
GSM3734954
day00.HERV1.CRISPRi.RNA.Rep1
GSM3734955
day00.HERV1.CRISPRi.RNA.Rep2
GSM3734956
day00.HERV2.CRISPRi.RNA.Rep1
GSM3734957
day00.HERV2.CRISPRi.RNA.Rep2
GSM3734958
HERV2-ins-clone1.HiC.Rep1
GSM3734959
HERV2-ins-clone1.HiC.Rep2
GSM3734960
HERV2-ins-clone2.HiC.Rep1
GSM3734961
HERV2-ins-clone2.HiC.Rep2
GSM3734962
HERV2-ins-clone1.RNA.Rep1
GSM3734963
HERV2-ins-clone1.RNA.Rep2
GSM3734964
HERV2-ins-clone2.RNA.Rep1
GSM3734965
HERV2-ins-clone2.RNA.Rep2
GSM3734966
marmoset.iPSC.HiC.Rep1
GSM3734967
marmoset.iPSC.HiC.Rep2
GSM3734970
marmoset.iPSC.RNA.Rep1
GSM3734971
marmoset.iPSC.RNA.Rep2
GSM3734974
day00.SMC3.ab9263.Rep1
GSM3734975
day00.Input.Batch3.Rep1
GSM3911373
chimp.iPSC.mTeSR1.HiC.Rep1
GSM3911374
chimp.iPSC.mTeSR1.HiC.Rep2
GSM3911375
chimp.iPSC.mTeSR1.RNA.Rep1
GSM3911376
chimp.iPSC.mTeSR1.RNA.Rep2
GSM3911377
bonobo.iPSC.mTeSR1.HiC.Rep1
GSM3911378
bonobo.iPSC.mTeSR1.HiC.Rep2
GSM3911379
bonobo.iPSC.mTeSR1.RNA.Rep1
GSM3911380
bonobo.iPSC.mTeSR1.RNA.Rep2
GSM3937672
chimp.iPSC.alter-medium.HiC.Rep1
GSM3937673
chimp.iPSC.alter-medium.HiC.Rep2
GSM3937674
chimp.iPSC.alter-medium.RNA.Rep1
GSM3937675
chimp.iPSC.alter-medium.RNA.Rep2
This SuperSeries is composed of the following SubSeries:
GSE116862
Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.
Relations
BioProject
PRJNA776887
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE186958_RAW.tar
248.6 Gb
(http)
(custom)
TAR (of BW, HIC, RPKM, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|