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1054 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BEDGRAPH
GSE134529	CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	ZIP TAR FPKM_TRACKING BEDGRAPH	Yingzhe Ding	Sep 16, 2021
GSE228822	Potent and uniform fetal hemoglobin induction via base editing	Expression profiling by high throughput sequencing Other	Homo sapiens	39	YAML TXT TAR BW BEDGRAPH	Jonanthan Yen	Apr 28, 2023
GSE50029	Long-range chromatin contacts reveal a role for the pluripotency and Polycomb networks in genome organization	Other	Mus musculus	201	XLSX BEDGRAPH SRA Run Selector	Kathrin Plath	Sep 12, 2013
GSE68890	MBNL Sequestration by Toxic RNAs and RNA Mis-Processing in the Myotonic Dystrophy Brain	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	39	XLSX TXT BEDGRAPH SRA Run Selector	Maurice Swanson	Jul 30, 2015
GSE72709	Three Dimensional (3D) conformational change of chromatin organization upon RA mediated Hox PG5 induction	Other	Mus musculus	12	XLSX BEDGRAPH SRA Run Selector	Tim Roloff	Sep 02, 2017
GSE74454	Synchronized translation programs across cellular compartments	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	36	XLSX WIG TXT BEDGRAPH SRA Run Selector	Mary T Couvillion	May 11, 2016
GSE76091	Diverse fates of uracilated HIV DNA during infection of myeloid lineage cells	Other	Homo sapiens	2	XLSX VCF BEDGRAPH SRA Run Selector	Jay R. Hesselberth	Jan 19, 2016
GSE84157	Major MLL fusion partners regulate promoter-proximal pausing and release of RNA polymerase II	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	49	XLSX XLS TXT BEDGRAPH SRA Run Selector	Gang Wei	Jun 30, 2021
GSE86791	RNA binding protein CPEB1 remodels host and viral RNA landscapes [RNA-Seq]	Expression profiling by high throughput sequencing Other	Homo sapiens	9	XLSX BEDGRAPH SRA Run Selector	Gene Yeo	Sep 17, 2016
GSE89914	The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Schizosaccharomyces pombe	30	XLSX TXT BW BEDGRAPH SRA Run Selector	Sina Wittmann	Feb 05, 2017
GSE90958	ncRNA transcription-induced changes in nuclear architecture directs with high precision enhancer-promoter interaction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	80	XLSX TXT BEDGRAPH BED SRA Run Selector	Kees Murre	Sep 18, 2017
GSE104503	Ribosome-profiling experiments for “Chronic repression by MAF1 supports futile RNA cycling as a mechanism for obesity resistance”	Expression profiling by high throughput sequencing Other	Mus musculus	12	XLSX BEDGRAPH SRA Run Selector	Nicolo Riggi	Nov 04, 2019
GSE115340	Promoter-enhancer communication occurs primarily within Gene Unit Sub-TADs (GUSTs)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	XLSX TXT BIGWIG BEDGRAPH SRA Run Selector	Siavash K Kurdistani	Oct 19, 2018
GSE115499	The lncRNA locus Handsdown regulates cardiac gene programs and is essential for early mouse development	Expression profiling by high throughput sequencing Other	Mus musculus	34	XLSX BEDGRAPH SRA Run Selector	Phillip Grote	Aug 15, 2019
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	XLSX XLS HIC BW BEDGRAPH BED SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE119187	Tri-4C: efficient and quantitative analysis of enhancer loops at hundred base pair resolution (Tri-4C)	Other	Homo sapiens	38	XLSX BEDGRAPH SRA Run Selector	Yizhou Zhu	Aug 28, 2020
GSE119366	Stag2 regulates hematopoietic differentiation and self-renewal through alterations in gene expression and topological control	Other	Mus musculus	4	XLSX PNG BEDGRAPH SRA Run Selector	Job Dekker	Sep 02, 2019
GSE123133	Transcriptonal and epigenetic changes of adult liver cells in vivo and in vitro	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	42	XLSX TXT TSV BEDGRAPH BED SRA Run Selector	Charles Bradshaw	Aug 29, 2019
GSE124132	Yeast sirutin family members maintain trannscription homeostasis to ensure genome stability	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	27	XLSX TXT BW BEDGRAPH SRA Run Selector	Jessica Lauren Feldman	May 04, 2019
GSE130383	The corepressors GPS2 and SMRT control enhancer and silencer function linked to eRNA transcription during inflammatory activation of macrophages	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	247	XLSX TXT BEDGRAPH SRA Run Selector	Zhiqiang Huang	Jan 26, 2021