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520 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BEDPE
GSE29098	ChimeraScan: A tool for identifying chimeric transcription in sequencing data	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM BEDPE SRA Run Selector	Matthew Iyer	Sep 01, 2011
GSE58135	Breast Cancer RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	168	BEDPE FPKM_TRACKING SRA Run Selector	Katherine E Varley	Jun 11, 2014
GSE55581	Diet-induced chromatin remodeling in mice livers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE60623	Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C	Other	Homo sapiens	4	BEDPE BEDQE BEDTE SRA Run Selector	Ferhat Ay	Apr 29, 2015
GSE62742	Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	249	BEDPE BIGWIG NARROWPEAK TXT SRA Run Selector	Fabian Grubert	Aug 20, 2015
GSE69600	Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci	Other	Homo sapiens	4	BED BEDPE SRA Run Selector	Paul Martin	Nov 24, 2015
GSE72164	Dynamic reorganization of extremely long-range promoter-promoter interactions between two states of pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	76	BEDGRAPH BEDPE BW TXT SRA Run Selector	Shuang-Yin Wang	Dec 07, 2015
GSE71551	Characterization of t(15;21) translocations in myeloid disorders	Expression profiling by high throughput sequencing	Homo sapiens	2	BEDPE SRA Run Selector	Alberto L'Abbate	Jul 29, 2016
GSE92881	Chromosome loop control of oncogenic MYC produces a common vulnerability in diverse cancers	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	BEDPE WIG	Richard A Young	Dec 24, 2016
GSE92793	Hi-C from A549 (ENCSR244BBG)	Other	Homo sapiens	7	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92804	Hi-C from A549 (ENCSR393LOP)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92811	Hi-C from A549 (ENCSR499RVD)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92819	Hi-C from A549 (ENCSR662QKG)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92825	Hi-C from A549 (ENCSR757IVO)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE104019	Telomere repeats induce domains of H3K27 methylation in Neurospora	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Neurospora crassa	34	BEDPE TDF TSV TXT SRA Run Selector	Eric Selker	Dec 29, 2017
GSE93921	BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions	Other	Homo sapiens	19	BEDGRAPH BEDPE SRA Run Selector	Zhengyu LIANG	Jan 23, 2018
GSE112000	Chromosome loop control of oncogenic MYC produces a common vulnerability in diverse cancers [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BEDPE SRA Run Selector	Richard A Young	Mar 20, 2018
GSE98448	Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	53	BEDPE MTX TSV TXT	Milos Nikolic	Apr 25, 2018
GSE100856	Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [HiChIP]	Other	Homo sapiens	4	BEDPE TXT SRA Run Selector	Milos Nikolic	Apr 25, 2018
GSE87254	Trac-looping measures genome structure and chromatin accessibility	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	34	BEDGRAPH BEDPE TXT XLS SRA Run Selector	Keji Zhao	Jul 12, 2018