GEO Browser - GEO

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252 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE26938	Global analysis of in vivo Pax8-binding sites in rat thyroid cells using high-throughput technologies: Chip-Seq and whole genome expression arrays	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	18	BED TXT WIG	Pilar Santisteban	Jun 28, 2012
GSE38571	Integrated transcriptomic and epigenomic analysis of primary human lung cell differentiation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	38	BED TXT	Crystal N Marconett	Apr 15, 2013
GSE40431	Dual-mode modulation of Smad signaling by Smad-interacting protein Sip1 is required for myelination in the central nervous system	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	6	CEL CHP WIG	Qing Richard Lu	Aug 31, 2012
GSE41580	A Master Cistromic Circuit Governing Hepatic Fibrogenesis	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	14	BEDGRAPH	Ruth T Yu	Apr 29, 2013
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE48112	BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	60	CEL WIG	James Bradner	Aug 06, 2013
GSE87769	Identification of Tfcp2l1 target genes in the mouse kidney	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	14	BED CEL TXT	Max Werth	Jun 19, 2017
GSE38056	Novel long non-coding RNAs are involved in cellular response to angiotensin II signaling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8	BED TXT SRA Run Selector	Amy Leung	Jun 30, 2013
GSE42207	Rodent trophoblast epigenome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	26	BED TXT SRA Run Selector	Edward Chuong	Dec 04, 2012
GSE42454	Activation of the chromatin-remodeling factor Smarca4/Brg1 cooperates with Olig2 to establish oligodendrocyte identity and control CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	19	BED	Yang Yu	Jan 20, 2013
GSE49389	Genome-wide analysis of the rat colon reveals site-specific differences in histone modifications and proto-oncogene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	7	BEDGRAPH TXT SRA Run Selector	Karen Triff	Aug 01, 2013
GSE53862	Chromatin occupancy and target genes of TCF7L2 in hepatocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	44	DIFF GTF SRA Run Selector	Sami Heikkinen	Nov 24, 2014
GSE61207	Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPKMEF2 signaling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	8	BED TXT	John C McDermott	Sep 09, 2014
GSE65120	Genome-wide occupancy of Tcf7l2/Tcf4 in rat and expression profiling of Tcf7l2 mutant and control mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	5	TXT WIG	Richard Lu	Feb 19, 2016
GSE66653	Methylation of H3K9 by G9a/GLP protects against pathological cardiac hypertrophy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	59	TXT SRA Run Selector	Felix Krueger	Dec 05, 2016
GSE69773	The influence of the estrous cycle on sex differences in the rat adult medial prefrontal cortex transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	20		Mohamed Kabbaj	Oct 23, 2015
GSE70144	The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	16	TXT	Chia-Feng Liu	Jun 23, 2015
GSE70354	Genomic binding and regulation of gene expression by the thyroid carcinoma-associated PAX8-PPARG fusion protein	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	14	TXT SRA Run Selector	Bing Ren	Jan 21, 2016
GSE70698	REST regulation of gene networks in adult neural stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	18		Jenny Hsieh	Nov 09, 2016