GEO Browser - GEO

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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TAR
GSE168455	Parallel tracking dosage compensation in the early mouse embryo	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Mus musculus castaneus	235	TAR TXT SRA Run Selector	Chunyao Wei	Mar 15, 2024
GSE213336	Basal cell extrusion primes pluripotent cells for differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	35	BW TAR TSV	Helene Kretzmer	Mar 06, 2024
GSE247678	Single-cell multi-omics sequencing revealed cytoskeleton defects led to human embryonic arrest characterized with zygotic genome activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	111	TAR TXT	Teng Wang	Nov 17, 2023
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	110	BIGWIG CGMAP H5 TAR	Ryan Lister	Aug 11, 2023
GSE204691	Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR	Chang Lu	Jul 04, 2023
GSE197740	Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	3	TAR	Dongsheng Bai	Feb 28, 2023
GSE210576	Efficient generation of marmoset primordial germ cell-like cells using induced pluripotent stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Callithrix jacchus	31	H5 TAR TXT	keren cheng	Feb 17, 2023
GSE192882	Direct reprogramming of human fetal retinal pigment epithelial cells into photoreceptor-like cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	26	COV TAR TXT	Guoping Fan	Oct 28, 2022
GSE172526	Postnatal expansion of the lymph node stromal cell pool towards reticular and CD34+ stromal cell subsets	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	86	BW TAR	Joern Pezoldt	Oct 07, 2022
GSE174311	Whole-genome bisulfite sequencing anlaysis of in vitro fertilized mouse hybrid blastocysts	Methylation profiling by high throughput sequencing	Mus musculus	1	TAR SRA Run Selector	Wan Kin Au Yeung	Sep 06, 2022
GSE209965	Decitabine-induced T cell remodeling facilitates a high antitumor response to PD-1 blockade therapy by promoting the expansion and effector function of CD8+ progenitor exhausted T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH TAR	Jing Nie	Jul 28, 2022
GSE201751	Global transcriptional, ATAC-sequencing, and methylation analyses of mouse totipotent potential stem cells and extended pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BEDGRAPH TAR TXT	Yiming Sun	May 04, 2022
GSE157720	YY1 safeguard multidimensional epigenetic landscape associated with extended pluripotency	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	63	BW TAR TXT SRA Run Selector	xiaotao dong	Apr 18, 2022
GSE195692	Human PSCs determine the competency of cerebral organoid differentiation via FGF signaling and epigenetic mechanisms	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	21	COV TAR TXT	Kent Imaizumi	Mar 09, 2022
GSE161570	KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	55	BED BW CGMAP CSV GAPPEDPEAK TAR XLSX SRA Run Selector	Xaingyu Pan	Feb 23, 2022
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE188968	Geminiviruses employ host DNA glycosylases to subvert DNA methylation-mediated defense	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Nicotiana benthamiana	69	TAR SRA Run Selector	Yijun Qi	Dec 20, 2021
GSE154521	Temporal Analyses of Cardiac Chromatin Accessibility, DNA Methylation and Epigenomic Structure Reveal Locus-Specific Regulation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	47	BW CGMAP TAR	Tom Vondriska	Dec 01, 2021
GSE181760	DNA Methylation Status in Mouse Liver Affected by Maternal High-fat, High-sucrose diet	Methylation profiling by high throughput sequencing	Mus musculus	2	TAR SRA Run Selector	Tomoyo Kawakubo-Yasukochi	Aug 18, 2021
GSE164783	Epigenetic abnormality due to maternal Zika virus infection	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	COV TAR	Guoping Fan	Jun 30, 2021