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Platform GPL10056 Query DataSets for GPL10056
Status Public on Feb 24, 2010
Title Ocimum Biosolutions Zebrafish 14K OciChip
Technology type spotted oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer Ocimum Biosolutions
Manufacture protocol Array Design and Printing
Zebrafish 14K Ocichip consists of 14240 spots printed on Corning® epoxy coated glass slides using Omnigrid (Gene Machines). Chip has been printed using 4x8 SMP3 pins on 75.5x 25.5x1.3 mm microarray glass slides. The origin offset values were 0 for X direction and 10000 for Y direction. The dot to dot distance is 190 mm; distance between subarrays is 150 mm and no of dots per array is 21x22=462. Oligos were printed using spotting buffer A from Ocimum Biosolution at 50% humidity and temperature at 22°C. The time taken by the robotic gridder to print Zebrafish14K altogether was 28 hrs. Each probe was checked for its performance by standard QC process followed at Ocimum Biosolutions. Printed slides were stored in a light-tight box in a bench-top dessicator, with desiccant and were kept at 4°C until they were used for hybridization
Support glass
Coating aminosilane
 
 
Contributor(s) Roa GA, Sharma R, Kiran SP, Begum H, Manohar D
Submission date Feb 17, 2010
Last update date Feb 24, 2010
Contact name Ocimum Biosolutions
E-mail(s) govind.a@ocimumbio.com, sandhya.p@ocimumbio.com, hazira.b@ocimumbio.com, anwaruddin.m@ocimumbio.com
Organization name Ocimum Biosolutions
Department Bioinformatics
Lab Ocimum
Street address Banjara Hills Road No., 1 VI Floor Reliance Classic
City Hyderabad
State/province Andhra Pradesh
ZIP/Postal code 500039
Country India
 

Data table header descriptions
ID
SEQUENCE Oligo Sequence
GB_ACC GenBank Accession number
Gene_Desc Gene Description
Gene_Sym Gene Symbol
Unigene_id UniGene Identifier
SPOT_ID

Data table
ID SEQUENCE GB_ACC Gene_Desc Gene_Sym Unigene_id SPOT_ID
obszebrafish#00001 TACACTCATGATAACCGGAGCGATCAGTGTTTGAAAAGTTCAGAGAAGAG AF318400.1 novel immune-type receptor 3a nitr3a Dr.133810
obszebrafish#00005 ATATCAGAGAGAGTGCTGTTGAGAACCCAACTGTGATTGCTCTTGGAATT AL591476.7 novel immune-type receptor 1n nitr1n
obszebrafish#00009 AAGAAACCTCTTCCAGTCGTTTCATCATTTCAAATTGTAGATCACAGATT AL591391.5 Zebrafish DNA sequence from clone BUSM1-186F8 in linkage group 7 Contains the nitr1a_3 gene for novel immune-type receptor 1a, allele 3, the nitr1c_3 gene for novel immune-type receptor 1c, allele 3, the nitr2e_1 gene for novel immune-type receptor 2e, al
obszebrafish#00013 AGATCCGAATTCTTCTCCAAACCCAATCAGTTCAGTCTTGACAACTTCCA NM_131154.1 cytochrome P450, family 19, subfamily A, polypeptide 1a cyp19a1a Dr.75765
obszebrafish#00125 AGTGCGAGAACTTCAAGAAACTGCCCATCAATGGCAACGGCAAACAGTAA AF285098.1 glutathione S-transferase pi gstp1 Dr.46820
obszebrafish#00129 ATCACAGTAACTCCAGCAGTTCAGACAGCAGGAGCAGGACAGACGGTTGA AF246184.1 immunoglobulin light iota variable 1, s5 igiv1s5 Dr.134331
obszebrafish#00133 GAGGATTTTTACTGGATGACCGGCTACCAACAGCAGCTCAACCCGGAGGC AB006323.2 v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog maf Dr.120867
obszebrafish#00137 CCAATAAAAACTGTCCTGTGGATAAACGTCGGAGAAACAGATGTCAGTAT U93471.1 nuclear receptor-related 1 nurr1
obszebrafish#00253 TATAACAACTACTGGAATCAGGGTTATGGGGGTCAGGGCTACGGATACGG NM_213302.1 zgc:77052 zgc:77052 Dr.75633
obszebrafish#00257 CTCGACCCTGACTTTGTCTGCATGAAGCTGGGAGCATGTCCTGAGGCCGT NM_131883.1 prosaposin psap Dr.75922
obszebrafish#00261 TTGTAAACAAGATGTGGGTTGGTGTAGCCAGCGAGGACAAAGCAGAACTG XM_684347.1 similar to exportin 6 LOC560950
obszebrafish#00265 CTGAAGTTGTGAAAGATCCTCGATTCTCTGCAAAAGTGAATGAAAAGAAA AL591520.5 Zebrafish DNA sequence from clone BUSM1-138M20, complete sequence
obszebrafish#00381 ACACAGACGCAGCGATCATACACAGAACCACCCCCAAGATAATGTCAGCC NM_205689.1 zgc:77804 zgc:77804
obszebrafish#00385 GAAAGCGGGTGGTTTTCCTCAAACAGATAGACAGCGGCCTCCTCATAGTC NM_001003844.1 ribosomal protein L6 rpl6 Dr.28231
obszebrafish#00389 CATGCGCTGGTTCCAGCAGAAGTATGACGGCATCATCCTCCCTGGCAAGT NM_001002139.1 ribosomal protein L11 rpl11 Dr.32573
obszebrafish#00393 CTATTGGATCTCTTCATAATTGTACGGAAGTCACCTGACATCAACTATCT NM_213293.1 zgc:77172 zgc:77172
obszebrafish#00509 AGTTCCTCCCCCGATCCCCAAAGAGCCAAGCAATTATGACTTTGTTTATG NM_213091.1 engulfment and cell motility 1 (ced-12 homolog, C. elegans) elmo1 Dr.132530
obszebrafish#00513 CCAGTTTTCATCAAGCTCAGTTTCCTCAGTATGTAATGGATGTGCTTCTG XM_701705.1 similar to Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) LOC556764 Dr.75535
obszebrafish#00517 CGGGACGAGTGTGGACGGACGGGACAGAGTCATACATGTTCAATAAACTG BX571814.10 Zebrafish DNA sequence from clone XX-7A10 in linkage group 25, complete sequence
obszebrafish#00521 CTGGAGCCCAGATCGAATTCCGTGATATGCTTGAATACACAGCAATCCAC BX571850.7 Zebrafish DNA sequence from clone DKEY-259L18 in linkage group 23, complete sequence

Total number of rows: 14240

Table truncated, full table size 1877 Kbytes.




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