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Status
Public on Jun 01, 2010
Title
Agilent-020923 ICEclcB13
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Pseudomonas knackmussii Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
clc element of strain B13
Submission date
Feb 22, 2010
Last update date
Feb 01, 2012
Contact name
Jan Roelof van der Meer
E-mail(s)
janroelof.vandermeer@unil.ch Phone
+41 21 692 5630
Organization name
University of Lausanne
Department
Department of Fundamental Microbiology
Lab
Lab of Jan Roelof van der Meer
Street address
Bâtiment Biophore, Quartier UNIL-Sorge
City
Lausanne
ZIP/Postal code
CH-1015
Country
Switzerland
Samples (29)
GSM513146 , GSM513147 , GSM513148 , GSM513149 , GSM513150 , GSM513151
GSM869802 ,
GSM869803 ,
GSM869804 ,
GSM869805 ,
GSM869806 ,
GSM869807 ,
GSM869808 ,
GSM869809 ,
GSM869810 ,
GSM869811 ,
GSM869812 ,
GSM1244574 ,
GSM1244575 ,
GSM1244576 ,
GSM1244577 ,
GSM1244578 ,
GSM1244579 ,
GSM1244580 ,
GSM1244581 ,
GSM1244582 ,
GSM1244583 ,
GSM1244584 ,
GSM1244585 Series (3)
GSE20461 Global coordinated bistable activation of the core region of the ICEclc genomic island in Pseudomonas knackmussii
GSE35501 Noise in rpoS expression determines cellular permissiveness for horizontal transfer of an Integrative and Conjugative Element
GSE51391 The role of the MfsR repressor on the transcriptome of the integrative and conjugative element ICEclc in Pseudomonas putida UWC1
Data table header descriptions ID Agilent feature number
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHOMOSOMAL_LOCATION SEQUENCE Sequence
Data table ID NAME SPOT_ID CONTROL_TYPE CHOMOSOMAL_LOCATION SEQUENCE 1
GE_BrightCorner
CONTROL
pos
2
DarkCorner
CONTROL
pos
5
PP_0387_2
PP_0387_2
FALSE
unmapped
GAGCCGACTTCCTGCGCATGTTCCCAAGCAACGAAACCGACCAGACCTGG
13
c2848.4233(g)(ORF2848)_2
c2848.4233(g)(ORF2848)_2
FALSE
unmapped
ACGCCGAGCACCGTACTGTTTTGGCTGTCATGCGTGATGTGCCTGTTCAT
15
65001.66000(i)_1
65001.66000(i)_1
FALSE
unmapped
CTTCATGGGGTGCTTCCTCCTTGGGGCGCTTGTGGAGACAGGCCGCTTGG
16
101001.102000(i)_7
101001.102000(i)_7
FALSE
unmapped
CGGGCAATCCAACGACTGTGGCAGATTCCTTGGCGATAAAACCGAGGCCA
18
83001.84000(i)_2
83001.84000(i)_2
FALSE
unmapped
ACACAGGTCGCAGTTGCCTTCGAGCGTGCGTCCGTTCACCGTCAGCAGGT
21
c96323.97567(g)(ORF96323)_3
c96323.97567(g)(ORF96323)_3
FALSE
unmapped
ATGCGTGGCAAGTGTTTCGGATGATGCTCAACGAGGATGGCGTCACTGCG
22
Reut_A0888_1
Reut_A0888_1
FALSE
unmapped
ACGACTGACGACGTGACTGAAGAGTTCTTCGAGAACGACACGCCCGCAGC
23
68205.69000(i)_4
68205.69000(i)_4
FALSE
unmapped
CGCGTGAAGTGGTTGGACAGGTGCCCCAGCTCGTACTGCAACATCTGCTG
29
5001.6000(i)_1
5001.6000(i)_1
FALSE
unmapped
GCCAAGTCTCAGATCGGAGTGGCCAGCAGAGTCTGTACGCGCAAGGTGTC
31
32346.32962(i)_2
32346.32962(i)_2
FALSE
unmapped
CGTGCCGCCGCTGCGTTGGTCAGCTAGTCGGCCACCACCGTTTGTATGGC
32
Reut_A2974_2
Reut_A2974_2
FALSE
unmapped
TCGACTTCGAAGACGTGAAGACGGTGATGGGCGAGCAGGGCAAGGCCATG
33
66001.67000(i)_3
66001.67000(i)_3
FALSE
unmapped
GGCTTCGGTGAGCAGCCAGATGCCGATCACGAGCAGCACTGCGCCGATGG
34
c58432.58926(g)(ORF58432)_4
c58432.58926(g)(ORF58432)_4
FALSE
unmapped
GGCTGCGCTGGCGCTCATCGATGTTCGGCTACTGGACCACATCGTCGTCG
35
c95993.96322(i)_3
c95993.96322(i)_3
FALSE
unmapped
ACTGCCTTCCGTTGCGTGTCGATCCTGACGGCTCCTTTTCCACAGCGGGC
37
43001.44000(i)_7
43001.44000(i)_7
FALSE
unmapped
TCCCCAGCGGCGTTCATCGTCCTCTACATCGCTCCACAGCAACCGCGTCG
38
Reut_A0003_3
Reut_A0003_3
FALSE
unmapped
GCGGACGTGTATGCCCAGTTCGACGAAAAGACCGACAAGCATCGCCTGAT
39
4001.5000(i)_5
4001.5000(i)_5
FALSE
unmapped
TGTACAGATGCATCCCAGGCTGAGGGCAGGACAGCAGAGCAGGCAGATCC
40
92001.93000(i)_2
92001.93000(i)_2
FALSE
unmapped
TCCGTCACCAGCTTGGCGACTCCCTTCATGGATTTGACAAGTTCGCCCTG
1120 117 Kbytes .Supplementary file Size Download File type/resource GPL10091_020923_D_GEO_20080708.txt.gz
245.4 Kb
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