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Platform GPL10103 Query DataSets for GPL10103
Status Public on May 20, 2010
Title Agilent-019315 Sarcophaga crassipalpis custom cDNA array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sarcophaga crassipalpis
Manufacturer Agilent
Manufacture protocol 60-mer oligo probes designed from S. crassipalpis EST contigs and singletons using Agilent eArray v2.0 and synthesized in situ by an ink-jet printing (Agilent) method on glass slides.
 
Description Probesets: UF_Scr_NF_100001 to UF_Scr_NF_100103: four forward probes for each NCBI record of Sarcophaga crassipalpis genes
Probesets: UF_Scr_NM_100104 to UF_Scr_NM_100206: four reverse (minus strand) probes for each NCBI Sarcophaga crassipalpis record
Probesets: UF_Scr_AF_100207 to UF_Scr_AF_123337: two forward probes for each annotated S. crassipalpis EST
Probesets: UF_Scr_AM_123338 to UF_Scr_AM_134993: one reverese (minus strand) probe for each annotated S. crassipalpis EST
Probesets: UF_Scr_UN_134994 from UF_Scr_UN_145629: one forward probe for each unannotated S. crassipalpis EST
 
Submission date Feb 25, 2010
Last update date Mar 22, 2012
Contact name Greg Ragland
E-mail(s) gragland@ufl.edu
Organization name University of Florida
Department Entomology and Nematology
Street address PO Box 110620
City Gainesville
State/province FL
ZIP/Postal code 32611
Country USA
 
Samples (40) GSM515610, GSM515611, GSM515612, GSM515613, GSM515614, GSM515615 
Series (2)
GSE20526 Transcriptional profiling of Sarcophaga crassipalpis pupal diapause
GSE36483 Transcriptomics of rapid cold-hardening and cold shock recovery in Sarcophaga bullata

Data table header descriptions
ID
COL Column
ROW Row
ProbeName Probe name
ACCESSION_STRING NCBI ID or ID from Sarcophaga EST Library
CONTROL Control (yes, no)
CONTROL_TYPE Control type
GB_ACC NCBI GenBank accession number
NCBI_SRA_Accession NCBI SRA accession number
ReverseComplement Is the probe a reverse complement, used to generate distribution of hyb intensities
SEQUENCE Probe sequence
SPOT_ID

Data table
ID COL ROW ProbeName ACCESSION_STRING CONTROL CONTROL_TYPE GB_ACC NCBI_SRA_Accession ReverseComplement SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner yes pos control
2 266 168 DarkCorner yes pos control
3 266 166 DarkCorner yes pos control
4 266 164 DarkCorner yes pos control
5 266 162 DarkCorner yes pos control
6 266 160 DarkCorner yes pos control
7 266 158 DarkCorner yes pos control
8 266 156 DarkCorner yes pos control
9 266 154 DarkCorner yes pos control
10 266 152 DarkCorner yes pos control
11 266 150 DarkCorner yes pos control
12 266 148 UF_Scr_AF_112289 SRR006884.259452 no SRR006884.259452 CCGTGGTATGGAATTGTTTTGTTTCTCAAATGTTGAATGATAAAAATGCTGTAAGCCAAG NCBI_SRA_Accession:SRR006884.259452
13 266 146 UF_Scr_AM_124942 EZ608203.1 no EZ608203.1 No TTAAAACACCAGCACCTTTTAGCAATTATATTGCAAGTACCAAGGCGAATTCCCCCGCGT
14 266 144 UF_Scr_AM_125179 EZ604847.1 no EZ604847.1 No CTGGGCTAATTTATTACGTACCGAGCTGCGTTTAGAAGAATCTTTGCGTTTGCGTTAAAA
15 266 142 UF_Scr_AM_126692 SRR006884.91613 no SRR006884.91613 TAAGCTGACAATCTCATTTAGATAATTGAAATTGTATGATGGCTTTTTACAAATCCTTAT NCBI_SRA_Accession:SRR006884.91613
16 266 140 UF_Scr_UN_137238 SRR006884.35459 no SRR006884.35459 CGTTGACCGACAAGCCAATTTTAACAACAAATGAGAAAAAGCATCCATCTTATTCAGATA NCBI_SRA_Accession:SRR006884.35459
17 266 138 UF_Scr_AF_114945 EZ598875.1 no EZ598875.1 No TTTTGGCAACAGGAGGTAAACGATATCGAGAAGTACTTTAAAACCCAAGTGGGTTCTCAT
18 266 136 UF_Scr_AM_125802 EZ602318.1 no EZ602318.1 No CACCCTGCAATGCTTGGGCCAATTTTCTTTCCAACATTTGAATTTGTCTCTTTTTGCTCT
19 266 134 UF_Scr_AF_109296 EOHUN8204B9S21___1rc_nr1nt0 no GCCGAAGTTGTACCTCACTTTAGTCATCTTAGTCGCATTAAAATAGCATCATAATCAATT ProbeName:UF_Scr_AF_109296
20 266 132 UF_Scr_UN_143314 SRR006884.131501 no SRR006884.131501 GGCTACCGGTGCCGGTAATTTAAAAACTTACCCTTTCTAGATTCGGTTACCAACTGTTAG NCBI_SRA_Accession:SRR006884.131501

Total number of rows: 45220

Table truncated, full table size 5948 Kbytes.




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