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Platform GPL10202 Query DataSets for GPL10202
Status Public on Mar 18, 2010
Title JCVI PFGRC Enterococcus faecalis 14K v1 array designed primarily based on strain HH22
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Enterococcus faecalis
Manufacturer JCVI PFGRC
Manufacture protocol QEF, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 6600 oligonucleotides, has 14688 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Mar 17, 2010
Last update date Mar 18, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain V583 Target map of strain V583
Strain OG1RF Target map of strain OG1RF
Strain TX0104 Target map of strain TX0104
Strain TX1322 Target map of strain TX1322
Strain ATCC_29200 Target map of strain ATCC_29200
Strain HH22 Target map of strain HH22
Strain TUSoD_Ef11 Target map of strain TUSoD_Ef11
ORF primary target link in Entrez Gene
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain V583 Strain OG1RF Strain TX0104 Strain TX1322 Strain ATCC_29200 Strain HH22 Strain TUSoD_Ef11 ORF SPOT_ID
QEF00001_A_1 GATTAAAAAAATTAATCAACAGTTAGTAGCTTTGAAGGAGGAAAAACAAATGATTAAAGGGACAGAAATC 28.57 32 95 HH22 HMPREF0346_2240 MerR family transcriptional regulator EF0966::70::100.0::3.4E-11::+ HMPREF0348_0873::70::100.0::3.4E-11::+ HMPREF0349_2032::70::100.0::3.4E-11::+ HMPREF0346_2240::70::100.0::3.4E-11::+ HMPREF0346_2240
QEF00001_A_10 TCTAGTCATTTTGGTAATGGAAATAGTTGTTGATTGGTTGAGTGCATATGTTAGGAGAACGTTATTATGA 32.86 30 79 TUSoD_Ef11 ENTFA0001_0426 ABC-type phosphate/phosphonate transport system, permease component ENTFA0001_0426::70::100.0::3.4E-11::+ ENTFA0001_0426
QEF00001_A_11 AACTTGGGAAGCAACAACGGCTATTCTGTTAAAGAAATGTTAGATGCTGCTCGCGAAGTGACAGGCCAAG 45.71 30 119 TUSoD_Ef11 ENTFA0001_0028 UDP-glucose 4-epimerase EF2783::70::97.14286::4.2E-10::+,EF1070::70::95.71428::1.1E-9::+ HMPREF0348_1287::70::94.28571::1.8E-9::+ HMPREF0349_1465::67::98.50746::5.1E-10::+,HMPREF0349_0053::68::95.588234::2.0E-9::+ HMPREF0346_2723::70::95.71428::1.3E-9::+ ENTFA0001_0028::70::100.0::3.6E-11::+,ENTFA0001_0166::70::97.14286::2.3E-10::+ ENTFA0001_0028
QEF00001_A_12 ACTACCTATTTATAGCTCTCTGATATTAAATCATGTTGAAATTGCTATTCGAAGTGCAGCTACTTTAGGC 34.29 32 97 TUSoD_Ef11 ENTFA0001_0427 phosphonates transport permease ENTFA0001_0427::70::100.0::3.4E-11::+ ENTFA0001_0427
QEF00001_A_13 ATCCATCTCTTTGAAGGAAACGTTCAGGTTTATTATTTTGATATTTCTTTTGAAGAAACGTTGAAAAGAC 30.0 31 92 TUSoD_Ef11 ENTFA0001_0031 conserved hypothetical protein EF1073::70::98.57143::5.2E-11::+ HMPREF0348_1311::69::95.652176::1.9E-9::+ HMPREF0349_1462::67::100.0::9.8E-11::+ HMPREF0345_2645::70::97.14286::1.2E-10::+ HMPREF0346_0020::70::98.57143::4.8E-11::+ ENTFA0001_0031::70::100.0::2.0E-11::+ ENTFA0001_0031
QEF00001_A_14 AAGTAAATTATTATAGAACAGACAAACTATTAGCTAAATTAAACATGCAGATAGATAGCTCTGTTTTATA 24.29 34 134 TUSoD_Ef11 ENTFA0001_0428 putative 3',5'-cyclic-nucleotide phosphodiesterase ENTFA0001_0428::70::100.0::4.0E-11::+ ENTFA0001_0428
QEF00001_A_15 AAATTTACCACCTGAAGTCATGACAGCTTTTTCAGAATCATTTATTTTTTTAATCAGTAACGATAAAGTT 27.14 31 101 ATCC_29200 HMPREF0345_2644 conserved hypothetical protein EF1074::70::98.57143::9.5E-11::+ HMPREF0348_1312::70::100.0::3.3E-11::+ HMPREF0349_1461::70::100.0::3.4E-11::+ HMPREF0345_2644::70::100.0::3.4E-11::+ HMPREF0346_0021::70::98.57143::8.4E-11::+ ENTFA0001_0032::70::100.0::3.8E-11::+ HMPREF0345_2644
QEF00001_A_16 ATTGATTTTATTATTCCAAATGAATCCTCAACAATTTATTCAAGAAAGTGCTAATCATAACGCTTTTTTT 24.29 34 93 HH22 HMPREF0346_0566 conserved hypothetical protein EF1598::70::100.0::8.8E-11::+ HMPREF0348_1770::70::100.0::8.8E-11::+ HMPREF0349_1004::70::100.0::8.8E-11::+ HMPREF0345_2189::70::100.0::8.8E-11::+ HMPREF0346_0566::70::100.0::4.2E-11::+ ENTFA0001_0437::70::100.0::8.8E-11::+ HMPREF0346_0566
QEF00001_A_17 CTTTACAAAAAATAATTTAGTTGTTGTATTTTCAACGTTTATTGTCTTTTTAGCGTTTGACTTGTTTAGA 24.29 35 88 HH22 HMPREF0346_0025 MFS family major facilitator transporter protein EF1078::70::100.0::7.3E-11::+ HMPREF0348_1315::70::98.57143::2.0E-10::+ HMPREF0349_1458::70::100.0::7.5E-11::+ HMPREF0345_2640::70::100.0::7.5E-11::+ HMPREF0346_0025::70::100.0::7.5E-11::+ ENTFA0001_0036::70::100.0::7.3E-11::+ HMPREF0346_0025
QEF00001_A_18 GGAGAATTTGGACCTGTCCTAATCCAAGACGTTCATTTATTAGAAAAATTAGCTCATTTTAATCGTGAGC 35.71 30 101 TUSoD_Ef11 ENTFA0001_0439 vegetative catalase EF1597::70::98.57143::2.3E-10::+ HMPREF0348_1769::70::98.57143::2.3E-10::+ HMPREF0349_1005::70::98.57143::2.3E-10::+ HMPREF0345_2193::70::98.57143::2.3E-10::+ HMPREF0346_0563::70::98.57143::2.3E-10::+ ENTFA0001_0439::70::100.0::5.0E-11::+ ENTFA0001_0439
QEF00001_A_19 ACATCATTTAAAAGGACACCATGGCAAAAAAACAAACGAAAATGGCGGTTTTTTAACAAAGTTATTGGCA 32.86 34 84 TUSoD_Ef11 ENTFA0001_0039 conserved hypothetical protein EF1082::70::97.14286::3.6E-10::+ HMPREF0348_1318::69::95.652176::1.4E-9::+ HMPREF0349_1455::70::98.57143::1.3E-10::+ HMPREF0345_2637::70::97.14286::3.3E-10::+ HMPREF0346_0029::70::97.14286::3.3E-10::+ ENTFA0001_0039::70::100.0::5.5E-11::+ ENTFA0001_0039
QEF00001_A_2 AGGATTTCAAATTTTCGAAGTTCAAGATGATTATGTTGTAGCCTTGCCATTTGTAGAGGAGAAACCACTA 35.71 31 88 TX0104 HMPREF0348_2927 conserved hypothetical protein EF2806::70::100.0::2.7E-11::+ HMPREF0348_2927::70::100.0::2.6E-11::+ HMPREF0348_2927
QEF00001_A_20 TAGAATTAACAACATTATGTATGATTAGAAATCAGAAAAATGAAATCCTTGTGCAAGAACGACAAAAAAA 25.71 32 91 HH22 HMPREF0346_0561 MutT/nudix family protein EF1595::70::100.0::2.4E-11::+ HMPREF0348_1767::70::100.0::2.3E-11::+ HMPREF0349_1007::70::100.0::2.3E-11::+ HMPREF0345_2195::70::100.0::2.4E-11::+ HMPREF0346_0561::70::100.0::2.3E-11::+ ENTFA0001_0441::70::100.0::2.4E-11::+ HMPREF0346_0561
QEF00001_A_21 CGTTAATTATTAGCGGCTTCATTATCTGGTACAAGCGACGGAAAAAGACGACCAGAAAGCATGGAAATTA 40.0 30 101 TUSoD_Ef11 ENTFA0001_0050 sortase family protein EF1094::60::98.333336::2.9E-8::+ HMPREF0348_1329::60::98.333336::2.9E-8::+ HMPREF0349_1444::60::98.333336::2.9E-8::+ HMPREF0345_2625::60::98.333336::2.9E-8::+ HMPREF0346_0041::60::98.333336::2.9E-8::+ ENTFA0001_0050::70::100.0::4.5E-11::+ ENTFA0001_0050
QEF00001_A_22 AAACAGGGGACACTAGAACAGAAGACGTGAAAACGTTACTAACCATGATGAAAAAGACATTGAATAAGTA 35.71 34 54 TUSoD_Ef11 ENTFA0001_0453 2-dehydro-3-deoxyphosphogluconate aldolase EF2975::70::100.0::2.8E-11::+,EF0839::70::98.57143::8.0E-11::+ HMPREF0348_3068::70::98.57143::8.0E-11::+ HMPREF0349_1515::70::100.0::3.2E-11::+,HMPREF0349_1902::70::98.57143::9.1E-11::+ ENTFA0001_0453::70::100.0::5.6E-11::+,ENTFA0001_2268::70::98.57143::1.4E-10::+ ENTFA0001_0453
QEF00001_A_23 GATGTCTAAATATGATATCACACAATCTGCCAATACTTTATCATTAGCGGTCCAAAATAAAATGACTGTC 32.86 30 75 HH22 HMPREF0346_0554 NADH oxidase nox EF1586::70::100.0::8.4E-11::+ HMPREF0348_1760::70::100.0::8.5E-11::+ HMPREF0349_1014::70::100.0::8.5E-11::+ HMPREF0345_2202::70::100.0::8.5E-11::+ HMPREF0346_0554::70::100.0::8.5E-11::+ ENTFA0001_0448::70::100.0::8.4E-11::+ HMPREF0346_0554
QEF00001_A_24 GACGAAAAAGAATTACTGGATTATTTAGTTTCCATTGATTTAAATATTCAAGAAGAATATACGATTAAAG 24.29 32 105 HH22 HMPREF0346_2278 metal-dependent transcriptional regulator protein EF1005::70::100.0::1.5E-11::+ HMPREF0348_0912::70::100.0::1.5E-11::+ HMPREF0349_2071::70::100.0::1.5E-11::+ HMPREF0345_1158::70::100.0::1.5E-11::+ HMPREF0346_2278::70::100.0::1.5E-11::+ ENTFA0001_0907::70::100.0::1.5E-11::+ HMPREF0346_2278
QEF00001_A_4 ACTATCGTTATAAATTTACATTCTGTTTCTTTAGCACGGGAGTATGCCACAAGAATTATTGCTTTAAAAA 30.0 30 78 TUSoD_Ef11 ENTFA0001_0424 phosphonate ABC transporter, ATP-binding protein phnC ENTFA0001_0424::70::100.0::3.3E-11::+ ENTFA0001_0424
QEF00001_A_5 TAGTTTTGCAATACTTGTTGTGACCATTATCTTCGGTATCTTAGCGCTTGTCTTAGACAACAAAAATAAC 34.29 30 99 TUSoD_Ef11 ENTFA0001_0007 conserved hypothetical protein EF0723::70::95.71428::1.4E-9::+ HMPREF0346_2002::70::95.71428::1.5E-9::+ ENTFA0001_0007::70::100.0::8.9E-11::+ ENTFA0001_0007
QEF00001_A_7 TTGGGTTCGGTTATTGATTTTAATCACAGTAGCCTACGTGTGTTATCGCTTTTTTTCAAAACATATTCAC 34.29 30 109 TUSoD_Ef11 ENTFA0001_0023 conserved hypothetical protein EF0741::70::97.14286::1.5E-10::+ HMPREF0348_0688::70::95.71428::3.9E-10::+ HMPREF0349_1795::70::98.57143::6.0E-11::+ HMPREF0345_0898::70::97.14286::1.5E-10::+ HMPREF0346_2019::70::97.14286::1.5E-10::+ ENTFA0001_0023::70::100.0::2.3E-11::+ ENTFA0001_0023

Total number of rows: 7100

Table truncated, full table size 2209 Kbytes.




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