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Status
Public on Mar 25, 2010
Title
Acropora palmata 2K EST array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Acropora palmata Manufacturer
University of California, Merced
Manufacture protocol
Microarrays consist of PCR-amplified cDNAs from A. palmata 2,051PCR-amplified cDNAs were spotted in duplicate on poly-lysine-coated slides yielding a microarray with 4,102 total features. cDNAs were chosen from EST libraries described in (Schwarz et al., 2008). To annotate the cDNAs, we performed a BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr).
Support
glass
Coating
polysine
Web link
http://sequoia.ucmerced.edu/MedinaLab/index.php Contributor(s)
Portune KJ , Voolstra CR , Medina M , Szmant AM Submission date
Mar 23, 2010
Last update date
Mar 25, 2010
Contact name
Kevin Portune
E-mail(s)
kevportune@hotmail.com Organization name
University of North Carolina, Wilmington
Street address
601 S. College Road
City
Wilmington
State/province
NC
ZIP/Postal code
28403
Country
USA
Samples (30)
GSM525427 , GSM525428 , GSM525429 , GSM525430 , GSM525431 , GSM525432
GSM525433 ,
GSM525434 ,
GSM525435 ,
GSM525436 ,
GSM525437 ,
GSM525438 ,
GSM525439 ,
GSM525440 ,
GSM525441 ,
GSM525442 ,
GSM525443 ,
GSM525444 ,
GSM525445 ,
GSM525446 ,
GSM525447 ,
GSM525448 ,
GSM525449 ,
GSM525450 ,
GSM525451 ,
GSM525452 ,
GSM525453 ,
GSM525454 ,
GSM525455 ,
GSM525456 Series (1)
GSE21038 Development and heat stress-induced transcriptomic changes during embryogenesis of the coral Acropora palmata
Data table header descriptions ID Annot BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr)
CLONE_ID EST clone id
Data table ID Annot CLONE_ID AOKF1004
Alpha-adducin
AOKF1004 AOKF1008
Uncharacterized protein KIAA0564
AOKF1008 AOKF1013
Bromodomain adjacent to zinc finger domain protein 2B
AOKF1013 AOKF1014
Myosin phosphatase Rho-interacting protein
AOKF1014 AOKF1016
ADP-ribosylation factor GTPase-activating protein 3
AOKF1016 AOKF1017
PCNA-associated factor
AOKF1017 AOKF1018
-
AOKF1018 AOKF1019
Eukaryotic initiation factor 4A-II
AOKF1019 AOKF1020
E3 ubiquitin-protein ligase TRAF7
AOKF1020 AOKF1026
-
AOKF1026 AOKF1028
-
AOKF1028 AOKF1029
WD repeat-containing protein 57
AOKF1029 AOKF1030
Myosin-XVIIIa
AOKF1030 AOKF1031
Coiled-coil domain-containing protein 47
AOKF1031 AOKF1037
UPF0559 protein v1g247787
AOKF1037 AOKF1039
-
AOKF1039 AOKF1044
Tetratricopeptide repeat protein 36 homolog
AOKF1044 AOKF1045
Rho GTPase-activating protein 26
AOKF1045 AOKF1047
S phase cyclin A-associated protein in the endoplasmic reticulum
AOKF1047 AOKF1050
Voltage-dependent anion-selective channel protein 2
AOKF1050
2051 74 Kbytes .Supplementary data files not provided
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