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Platform GPL10343 Query DataSets for GPL10343
Status Public on Oct 01, 2010
Title Nimblegen_Custom_PAH_array_V01
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sphingomonas paucimobilis
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description The Platform data table reflects a condensed representation of the expression array's replicates (SEQ_ID) features. The .ndf file is linked below as a supplementary file.
 
Submission date Apr 20, 2010
Last update date Oct 01, 2010
Contact name TERRAT Sebastien
E-mail(s) sebastien.terrat@gmail.com
Phone 33(0)473407604
Fax 33(0)473407670
Organization name UMR CNRS 6023
Department Génomique Intégrée des Interactions Microbiennes
Lab Laboratoire Microorganismes : Génome et Environnement
Street address 24, avenue des Landais, Campus des Cézeaux
City AUBIERE
ZIP/Postal code 63171
Country France
 
Samples (17) GSM534815, GSM534816, GSM534817, GSM534818, GSM534819, GSM534820 
Series (1)
GSE21402 Expression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3

Data table header descriptions
ID
SEQ_UNIQUE Unique number corresponding to each unique probe
GENE_ID Gene name used in the study
TARGETED_PROT Targeted protein description for our studied strain
GB_ACC GenBank accession number of the contig sequence where the gene sequence corresponding in our strain can be found

Data table
ID SEQ_UNIQUE GENE_ID TARGETED_PROT GB_ACC
bphA1f_MD_A_0001 1 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0002 2 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0003 3 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0004 4 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0005 5 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0006 6 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0007 7 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0008 8 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0009 9 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0010 10 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0011 11 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0012 12 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0013 13 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0014 14 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0015 15 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0016 16 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0017 17 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0018 18 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0019 19 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254
bphA1f_MD_A_0020 20 phnA1a Putative alpha subunit of ring-hydroxylating dioxygenase FM882254

Total number of rows: 8048

Table truncated, full table size 647 Kbytes.




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Supplementary file Size Download File type/resource
GPL10343_090916_MANIPES_PAHs_TCE.ndf.gz 23.8 Mb (ftp)(http) NDF

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