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Platform GPL10362 Query DataSets for GPL10362
Status Public on Dec 31, 2010
Title Agilent-017479 Nelson Whole Mouse Genome Microarray 4x44K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Submission date Apr 27, 2010
Last update date Jan 17, 2013
Contact name Ilsa Coleman
E-mail(s) icoleman@fredhutch.org
Phone 206-667-1703
Organization name Fred Hutchinson Cancer Center
Department Human Biology
Lab Peter Nelson
Street address 1100 Fairview Ave N, E2-112
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (8) GSM538021, GSM538022, GSM538023, GSM538024, GSM538025, GSM538026 
Series (1)
GSE21542 The Effects of Aging on the Molecular and Cellular Composition of the Prostate Microenvironment

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 1 1 GE_BrightCorner GE_BrightCorner pos
2 2 1 DarkCorner DarkCorner pos
3 3 1 DarkCorner DarkCorner pos
4 4 1 DarkCorner DarkCorner pos
5 5 1 DarkCorner DarkCorner pos
6 6 1 DarkCorner DarkCorner pos
7 7 1 DarkCorner DarkCorner pos
8 8 1 DarkCorner DarkCorner pos
9 9 1 DarkCorner DarkCorner pos
10 10 1 DarkCorner DarkCorner pos
11 11 1 DarkCorner DarkCorner pos
12 12 1 A_51_P448109 A_51_P448109 FALSE NM_009794 NM_009794 12334 Capn2 calpain 2 Mm.19306 ENSMUST00000068505 ref|NM_009794|ens|ENSMUST00000068505|ens|ENSMUST00000111003|gb|D38117 chr1:184398305-184398247 mm|1qH5 Mus musculus calpain 2 (Capn2), mRNA [NM_009794] GO:0001824(blastocyst development)|GO:0004197(cysteine-type endopeptidase activity)|GO:0004198(calcium-dependent cysteine-type endopeptidase activity)|GO:0005509(calcium ion binding)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0006508(proteolysis)|GO:0007520(myoblast fusion)|GO:0008233(peptidase activity)|GO:0008234(cysteine-type peptidase activity)|GO:0016020(membrane)|GO:0016787(hydrolase activity) ACCAATGACTACACTTAGACACTTTGTATCTGGACCTTGAACTTACGGGAACATTGACTT
13 13 1 A_52_P322467 A_52_P322467 FALSE AK032189 Mm.12915 ENSMUST00000014141 ens|ENSMUST00000014141|ens|ENSMUST00000111289|gb|AK032189|gb|AK004988 chr1:173271724-173271665 mm|1qH3 Nitrilase homolog 1 (EC 3.5.-.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8VDK1] [ENSMUST00000014141] CCCTTTGGTTTTTCAGACAAAATTTAAGAGCCCTCATAAAGCCATAAGTATTGATTACCC
14 14 1 A_51_P519420 A_51_P519420 FALSE NM_033321 NM_033321 94045 P2rx5 purinergic receptor P2X, ligand-gated ion channel, 5 Mm.156893 ENSMUST00000006104 ref|NM_033321|ens|ENSMUST00000006104|ens|ENSMUST00000092929|ens|ENSMUST00000092928 chr11:72985662-72985721 mm|11qB4 Mus musculus purinergic receptor P2X, ligand-gated ion channel, 5 (P2rx5), mRNA [NM_033321] GO:0004872(receptor activity)|GO:0004931(ATP-gated cation channel activity)|GO:0005216(ion channel activity)|GO:0005887(integral to plasma membrane)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0007166(cell surface receptor linked signal transduction)|GO:0016021(integral to membrane) TTTATTGGTGCATGCTGCATTTTAGTCCTATCTGAGAGACTTAAAGGCGATGCTGACCTG
15 15 1 A_52_P947672 A_52_P947672 FALSE AK053826 Mm.320732 gb|AK053826|riken|E130311L24|nap|NAP088059-1|tc|TC1612700 chr6:28082700-28082641 mm|6qA3.2 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130311L24 product:unclassifiable, full insert sequence. [AK053826] GTCAACTACAGGTTGTACTACATCCTCGATAAAGAGAATATCTGCTCTTAAATAAGGGAT
16 16 1 A_52_P221824 A_52_P221824 FALSE NM_144512 NM_144512 14412 Slc6a13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 Mm.258596 ENSMUST00000064580 ref|NM_144512|ens|ENSMUST00000064580|gb|AK149557|gb|BC021606 chr6:121287577-121287636 mm|6qF1 Mus musculus solute carrier family 6 (neurotransmitter transporter, GABA), member 13 (Slc6a13), mRNA [NM_144512] GO:0005328(neurotransmitter:sodium symporter activity)|GO:0005332(gamma-aminobutyric acid:sodium symporter activity)|GO:0005887(integral to plasma membrane)|GO:0006810(transport)|GO:0006836(neurotransmitter transport)|GO:0015293(symporter activity)|GO:0016020(membrane)|GO:0016021(integral to membrane) TGATGCCCCTATTCCAGGGTGGTCCACACATTGTGACGTGCCCGAATCAATAACATCCCA
17 17 1 A_51_P427151 A_51_P427151 FALSE NM_138671 NM_138671 192185 Nadk NAD kinase Mm.28347 ENSMUST00000030939 ref|NM_138671|ref|NM_001159637|ens|ENSMUST00000030939|ens|ENSMUST00000105612 chr4:154964896-154964955 mm|4qE2 Mus musculus NAD kinase (Nadk), transcript variant 2, mRNA [NM_138671] GO:0000166(nucleotide binding)|GO:0003951(NAD+ kinase activity)|GO:0005524(ATP binding)|GO:0005829(cytosol)|GO:0008152(metabolic process)|GO:0016301(kinase activity)|GO:0016740(transferase activity)|GO:0046872(metal ion binding) GAGCAGGGTCTGAAGTGTGTGCCACCCATCTCAAAAGCAAGTGTTGACAAATCTAGAAGC
18 18 1 A_51_P474078 A_51_P474078 FALSE NM_009156 NM_009156 20364 Sepw1 selenoprotein W, muscle 1 Mm.42829 ref|NM_009156|gb|AF015284|nap|NAP008251-001 chr7:16502612-16502553 mm|7qA2 Mus musculus selenoprotein W, muscle 1 (Sepw1), mRNA [NM_009156] GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0008430(selenium binding)|GO:0016491(oxidoreductase activity)|GO:0045454(cell redox homeostasis) GGCAGCCATGTTTCCAGGTGTTCCCGGTTGAATAAAGTTTGGATGAGGTAACCCAAAAAA
19 19 1 A_52_P245806 A_52_P245806 FALSE NR_002844 NR_002844 22097 Tsix X (inactive)-specific transcript, antisense Mm.472939 ref|NR_002844|gb|AF138745|gb|AF541962|nap|NAP105636-1 chrX:100676837-100676896 mm|XqD Mus musculus X (inactive)-specific transcript, antisense (Tsix), antisense RNA [NR_002844] GO:0009048(dosage compensation, by inactivation of X chromosome)|GO:0048096(chromatin-mediated maintenance of transcription) CCAAGCAATAATGCACATTTCTAACTGGAAGTCAAGCAAACACCAACACTTTCACACTTG
20 20 1 A_51_P264548 A_51_P264548 FALSE NR_033197 NR_033197 66769 4933427E11Rik RIKEN cDNA 4933427E11 gene Mm.347941 ENSMUST00000056711 ref|NR_033197|ens|ENSMUST00000056711|gb|AK016947|gb|AK006985 chr15:74540278-74540337 mm|15qD3 Mus musculus RIKEN cDNA 4933427E11 gene (4933427E11Rik), non-coding RNA [NR_033197] AAAGAAAGTCGTCGAAGTATAAAGTTTATTCTGATTGTCTGTAAGCACAACGGTTCGTTG

Total number of rows: 45190

Table truncated, full table size 24511 Kbytes.




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