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Platform GPL10386 Query DataSets for GPL10386
Status Public on May 05, 2010
Title PFGRC Trypanosoma cruzi Oligonucleotide Array v2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Trypanosoma cruzi
Manufacturer PFGRC - Pathogen Functional Genomics Resource Center
Manufacture protocol sense strand
 
Description There are 192 spot differences between GPL8132 (ie, version 1) and the version 2 array. Column 'Corresponding v1 ID' identifies the 192 divergent array features.
 
Submission date May 05, 2010
Last update date May 05, 2010
Contact name Todd A Minning
E-mail(s) tminning@uga.edu
Phone 706-542-3155
Fax 706-542-3582
URL http://paige.ctegd.uga.edu/
Organization name University of Georgia
Department CTEGD
Lab Tarleton Research Group
Street address Rm 310 Coverdell
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Samples (6) GSM588081, GSM588082, GSM588083, GSM588084, GSM588085, GSM588086
Series (1)
GSE23855 Epigenetic regulation of transcription and virulence of Trypanosoma cruzi

Data table header descriptions
ID
Oligo ID PFGRC ID for oligonucleotide
SEQUENCE sequence of oligonucleotide
GC% %GC of oligonucleotide
Internal Repeat Score Internal Repeat Score of oligonucleotide
Self-Annealing Score Self-Annealing Score of oligonucleotide
Primary Target official gene symbol
Common Name of Primary Target Common Name of Primary Target
Gene Size size (bp) of target gene
Gene ID TIGR gene ID
High Cross Hyb? if yes, oligonucleotide was >80% homologous to more than 3 annotations
ORF Entrez Gene link
SPOT_ID
Corresponding v1 ID Corresponding ID in GPL8132
Corresponding v1 OligoID Corresponding Oligo ID in GPL8132

Data table
ID Oligo ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Target Common Name of Primary Target Gene Size Gene ID High Cross Hyb? ORF SPOT_ID Corresponding v1 ID Corresponding v1 OligoID
1 2QTC00001_D_1 CTCTCTCAAAATCTTGAGTTCCCTATGGCTTGCACTTTGGCGAGGAATCCGCTTTTGGCAAATGCGGCTT 48.57 29 80 Tc00.1047053509601.120 hypothetical protein, conserved 1650 8148.t00012 No Tc00.1047053509601.120 QTC00001_D_1
2 2QTC00003_P_13 AATGGAGGAAGACGCCCAGTTGCGTAAGAAGAACGAACGGAAGAAGGAATTTATCGCCGAGCGATTGAAG 48.57 31 68 Tc00.1047053509561.110 hypothetical protein, conserved 2640 8133.t00011 No Tc00.1047053509561.110 QTC00003_P_13
3 2QTC00006_L_13 GAACAGCGTCGACGCAAAGGATCATAAAAATAAGAATAAATTTGTTGTGGATGGGAAAGAAGAAAAAGAG 35.71 31 56 Tc00.1047053506657.70 RNA editing 3' terminal uridylyl transferase 1, putative 2985 7042.t00007 No Tc00.1047053506657.70 QTC00006_L_13
4 2QTC00009_H_13 ATCAGGCAGAAACTCCATGGCACCACCGATGCGCACGACTGTTAATGAAAACGAGACGGCACGCACTTTG 52.86 30 66 Obsolete --Obsolete QTC00009_H_13
5 2QTC00033_D_13 Reserved Reserved --Reserved QTC00033_D_13
6 2QTC00014_P_1 TGTCTATATTTGTTTTGTATCCCTACCGGGACTTAACGAAAATTTTTAGCATTAATCCTATTACTCGCCT 34.29 30 90 Tc00.1047053506295.60 hypothetical protein, conserved 876 6889.t00006 No Tc00.1047053506295.60 QTC00014_P_1
7 2QTC00017_L_1 CCCGCGTAGACGACGAGCGAGAGCGTGAAGAAAAGTTCCCGGCATATGAACCCGGAAGCGCTCCGCAGCT 61.43 29 109 Tc00.1047053506865.50 hypothetical protein, conserved Tc00.1047053506865.50 QTC00017_L_1
8 2QTC00020_H_1 GATGGGGTATGGCAAAGATTGTGAAAAGGTAAAGTACGACGGCAAATTCTCACTCAAACACTGCTTCACA 42.86 30 75 Tc00.1047053507817.40 hypothetical protein, conserved 774 7482.t00004 No Tc00.1047053507817.40 QTC00020_H_1
9 2QTC00034_D_1 Reserved Reserved --Reserved QTC00034_D_1
10 2QTC00024_P_13 AGACCACTTGCGGCAGCTCTTAGCAAAAAAGGAAGAAATTGTTCAGAAGCTCACGGCTACTATTGAAGAT 42.86 30 72 Tc00.1047053509059.80 hypothetical protein, conserved 2268 7982.t00008 No Tc00.1047053509059.80 QTC00024_P_13
11 2QTC00027_L_13 TTGTCTCCAACGTTGAGCGCGGGCAGCAGTCGTAATGTACTTGAAACCAAGACACCTTTCATTGGGAGCG 51.43 28 78 Tc00.1047053510175.30 trans-sialidase (pseudogene), putative heterozygous, non-Esmeraldo-like haplotype Tc00.1047053510175.30 QTC00027_L_13
12 2QTC00030_H_13 TTCAGAGTTGAACAACGTCAATGGTATTGTCAAGGATATGTGTGGGGCAGAGCAGATCAAAGAAACGGCA 44.29 30 74 Tc00.1047053511231.60 hypothetical protein, conserved 2541 8628.t00006 No Tc00.1047053511231.60 QTC00030_H_13
13 2QTC00001_D_1 CTCTCTCAAAATCTTGAGTTCCCTATGGCTTGCACTTTGGCGAGGAATCCGCTTTTGGCAAATGCGGCTT 48.57 29 80 Tc00.1047053509601.120 hypothetical protein, conserved 1650 8148.t00012 No Tc00.1047053509601.120 QTC00001_D_1
14 2QTC00003_P_13 AATGGAGGAAGACGCCCAGTTGCGTAAGAAGAACGAACGGAAGAAGGAATTTATCGCCGAGCGATTGAAG 48.57 31 68 Tc00.1047053509561.110 hypothetical protein, conserved 2640 8133.t00011 No Tc00.1047053509561.110 QTC00003_P_13
15 2QTC00006_L_13 GAACAGCGTCGACGCAAAGGATCATAAAAATAAGAATAAATTTGTTGTGGATGGGAAAGAAGAAAAAGAG 35.71 31 56 Tc00.1047053506657.70 RNA editing 3' terminal uridylyl transferase 1, putative 2985 7042.t00007 No Tc00.1047053506657.70 QTC00006_L_13
16 2QTC00009_H_13 ATCAGGCAGAAACTCCATGGCACCACCGATGCGCACGACTGTTAATGAAAACGAGACGGCACGCACTTTG 52.86 30 66 Obsolete --Obsolete QTC00009_H_13
17 2QTC00033_D_13 Reserved Reserved --Reserved QTC00033_D_13
18 2QTC00014_P_1 TGTCTATATTTGTTTTGTATCCCTACCGGGACTTAACGAAAATTTTTAGCATTAATCCTATTACTCGCCT 34.29 30 90 Tc00.1047053506295.60 hypothetical protein, conserved 876 6889.t00006 No Tc00.1047053506295.60 QTC00014_P_1
19 2QTC00017_L_1 CCCGCGTAGACGACGAGCGAGAGCGTGAAGAAAAGTTCCCGGCATATGAACCCGGAAGCGCTCCGCAGCT 61.43 29 109 Tc00.1047053506865.50 hypothetical protein, conserved Tc00.1047053506865.50 QTC00017_L_1
20 2QTC00020_H_1 GATGGGGTATGGCAAAGATTGTGAAAAGGTAAAGTACGACGGCAAATTCTCACTCAAACACTGCTTCACA 42.86 30 75 Tc00.1047053507817.40 hypothetical protein, conserved 774 7482.t00004 No Tc00.1047053507817.40 QTC00020_H_1

Total number of rows: 26496

Table truncated, full table size 5238 Kbytes.




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