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Status
Public on May 13, 2010
Title
Microarray lab/BRI-NRC Solanum chacoense 7.7K V1.0 array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Solanum chacoense Manufacturer
BRI-NRC
Manufacture protocol
PCR products were resuspended in 10 µl of 50% DMSO and arrayed from 384 well microtiter plates onto UltraGAPSTM slides (Corning incorporated, Corning, NY, USA). A total of 7741 ESTs spotted in duplicate along with a variety of controls.
Description
The Platform data table reflects a condensed representation of the array's duplicate features.
Submission date
May 12, 2010
Last update date
May 13, 2010
Contact name
Faiza Tebbji
E-mail(s)
t_faiza2000@yahoo.fr Organization name
CHU Québec
Street address
2705 Boulevard Laurier
City
Québec
ZIP/Postal code
G1V 4G2
Country
Canada
Samples (164)
GSM542832 , GSM542833 , GSM542834 , GSM542835 , GSM542836 , GSM542837
GSM542838 ,
GSM542839 ,
GSM542840 ,
GSM542841 ,
GSM542842 ,
GSM542843 ,
GSM542844 ,
GSM542845 ,
GSM542846 ,
GSM542847 ,
GSM542848 ,
GSM542849 ,
GSM542850 ,
GSM542851 ,
GSM542852 ,
GSM542853 ,
GSM542854 ,
GSM542855 ,
GSM542856 ,
GSM542857 ,
GSM542858 ,
GSM542859 ,
GSM542860 ,
GSM542861 ,
GSM542862 ,
GSM542863 ,
GSM542864 ,
GSM542865 ,
GSM542866 ,
GSM542867 ,
GSM542868 ,
GSM542869 ,
GSM542870 ,
GSM542871 ,
GSM542872 ,
GSM542873 ,
GSM542874 ,
GSM542875 ,
GSM542876 ,
GSM542877 ,
GSM542878 ,
GSM542879 ,
GSM542880 ,
GSM542881 ,
GSM542882 ,
GSM542883 ,
GSM542884 ,
GSM542885 ,
GSM542886 ,
GSM542887 ,
GSM542888 ,
GSM542889 ,
GSM542890 ,
GSM542891 ,
GSM542892 ,
GSM542893 ,
GSM545982 ,
GSM545983 ,
GSM545984 ,
GSM545985 ,
GSM545986 ,
GSM545987 ,
GSM545988 ,
GSM545989 ,
GSM545990 ,
GSM545991 ,
GSM545992 ,
GSM545993 ,
GSM545994 ,
GSM545995 ,
GSM545996 ,
GSM545997 ,
GSM545998 ,
GSM545999 ,
GSM546000 ,
GSM546001 ,
GSM546002 ,
GSM546003 ,
GSM546004 ,
GSM546005 ,
GSM546006 ,
GSM546007 ,
GSM546008 ,
GSM546009 ,
GSM546010 ,
GSM546011 ,
GSM546012 ,
GSM546013 ,
GSM546014 ,
GSM546015 ,
GSM546016 ,
GSM546017 ,
GSM546018 ,
GSM546019 ,
GSM546020 ,
GSM546021 ,
GSM546022 ,
GSM546023 ,
GSM546024 ,
GSM546025 ,
GSM546026 ,
GSM546027 ,
GSM546028 ,
GSM546029 ,
GSM546030 ,
GSM546031 ,
GSM546032 ,
GSM546033 ,
GSM546034 ,
GSM546035 ,
GSM546036 ,
GSM546037 ,
GSM546038 ,
GSM546039 ,
GSM546040 ,
GSM546041 ,
GSM546042 ,
GSM546043 ,
GSM546044 ,
GSM546045 ,
GSM546046 ,
GSM546047 ,
GSM546048 ,
GSM546049 ,
GSM546050 ,
GSM546051 ,
GSM546052 ,
GSM546053 ,
GSM546054 ,
GSM546055 ,
GSM546056 ,
GSM546057 ,
GSM546058 ,
GSM546059 ,
GSM546060 ,
GSM546061 ,
GSM546062 ,
GSM546063 ,
GSM546064 ,
GSM546065 ,
GSM546066 ,
GSM546067 ,
GSM546068 ,
GSM546069 ,
GSM546070 ,
GSM546071 ,
GSM546072 ,
GSM546073 ,
GSM546074 ,
GSM546075 ,
GSM546076 ,
GSM546077 ,
GSM546078 ,
GSM546079 ,
GSM546080 ,
GSM546081 ,
GSM546082 ,
GSM546083 Series (2)
GSE21552 Transcription profiling of fertilization and early seed development events in a solanaceous species using a 7.7K cDNA microarray from Solanum chacoense ovules
GSE21957 Pollination type recognition from a distance in the ovary is revealed by a global transcriptomic analysis.
Data table header descriptions ID Internal database id
GB_ACC Description Hortolog GO biological process GO molecular function GO cellular component SPOT_ID
Data table ID GB_ACC Description Hortolog GO biological process GO molecular function GO cellular component SPOT_ID SV5_01A01
DN976421 putative RNA-binding protein
AT1G48110.1 | Symbols: ECT7 | ECT7 (evolutionarily conserved C-terminal region 7) | chr1:17774008-17776475 REVERSE
SV5_01A02
SV5_01A02
SV5_01A03
DN976423 bZIP transcription factor
gi|2401257|dbj|BAA22204.1| TBZ17 [Nicotiana tabacum]
SV5_01A04
SV5_01A04
SV5_01A05
SV5_01A05
SV5_01A06
DN976426 WD-repeat protein An11 transparent testa glabra (Ttg)
AT5G24520.2 | Symbols: TTG, TTG1 | TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding | chr5:8371711-8372736 REVERSE
GO:0000166|nucleotide binding
SV5_01A07
SV5_01A07
SV5_01A09
DN976429 putative embryo-abundant protein Methyltransferase
AT2G41380.1 | Symbols: | embryo-abundant protein-related | chr2:17259059-17259964 FORWARD
GO:0005739|mitochondrion
SV5_01A11
DN976431 activator-like transposable element putative Tam3-transposase
gi|121730616|ref|ZP_01682799.1| fatty oxidation complex alpha subunit [Vibrio cholerae V52]
SV5_01A12
DN976432 RNA-binding glycine-rich protein
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:15750190-15751582 REVERSE
GO:0003723|RNA binding
SV5_01B03
DN976435 CYSTEINE PROTEINASE INHIBITOR B (CYSTATIN B)
AT2G31980.1 | Symbols: | cysteine proteinase inhibitor-related | chr2:13616323-13616847 REVERSE
GO:0004869|cysteine protease inhibitor activity
GO:0012505|endomembrane system
SV5_01B04
PsAD1
SV5_01B04
SV5_01B05
DN976437 E2 ubiquitin-conjugating enzyme putative
AT5G05080.2 | Symbols: UBC22 | UBC22 (ubiquitin-conjugating enzyme 18) | chr5:1498728-1499973 REVERSE
SV5_01B06
DN976438 nucleotide sugar epimerase-like protein
AT4G30440.1 | Symbols: GAE1 | GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic | chr4:14881982-14883271 REVERSE
GO:0009225|nucleotide-sugar metabolic process
GO:0003824|catalytic activity; GO:0050378|UDP-glucuronate 4-epimerase activity
SV5_01B07
SV5_01B07
SV5_01B08
DN976440 AT1G19140.1 | Symbols: | similar to PREDICTED: similar to Coenzyme Q9 homolog (yeast) [Gallus gallus] (GB:XP_414002.1); similar to Os03g0405100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050328.1); contains InterPro domain RpsU-divergently transcribed; (InterPro:IPR012762); contains InterPro domain COQ9; (InterPro:IPR013718) | chr1:6611017-6612405 REVERSE
GO:0006744|ubiquinone biosynthetic process
GO:0005739|mitochondrion
SV5_01B09
DN976441 gi|76573369|gb|ABA46789.1| unknown [Solanum tuberosum]
SV5_01B10
DN976442 CBBY PROTEIN
AT5G45170.1 | Symbols: | CbbY protein-related | chr5:18287782-18290356 REVERSE
GO:0009507|chloroplast
SV5_01B11
DN976443 AT5G55710.1 | Symbols: | similar to tic20 protein-related [Arabidopsis thaliana] (TAIR:AT2G47840.1); similar to Os02g0726600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047992.1); similar to hypothetical protein Tery_3886 [Trichodesmium erythraeum IMS101] (GB:YP_723396.1) | chr5:22572221-22572850 REVERSE
SV5_01B12
SV5_01B12
6791 1513 Kbytes .Supplementary file Size Download File type/resource GPL10411_full_array_layout.txt.gz
84.9 Kb
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