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Status
Public on May 21, 2010
Title
HOMIM-v.02
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Bacteria Manufacturer
Michigan State University Research Technology Support Facility
Manufacture protocol
16S rRNA-based oligonucleotide reverse capture probes were custom synthesized with a 5’-(C6)-amine modified base, eight spacer thymidines and 18 to 20-nucleotides of target sequence, and printed on 25 x 76 mm aldehyde-coated glass slides
Submission date
May 20, 2010
Last update date
Oct 02, 2012
Contact name
Bruce J Paster
E-mail(s)
bpaster@forsyth.org Phone
617-892-8288
Fax
617-892-8432
Organization name
The Forsyth Institute
Street address
140 Fenway
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Samples (124)
GSM545556 , GSM545557 , GSM545558 , GSM545559 , GSM545560 , GSM545561
GSM545562 ,
GSM545563 ,
GSM545564 ,
GSM545565 ,
GSM545566 ,
GSM849113 ,
GSM849114 ,
GSM849115 ,
GSM849116 ,
GSM849117 ,
GSM849118 ,
GSM849119 ,
GSM849120 ,
GSM849121 ,
GSM849122 ,
GSM849123 ,
GSM849124 ,
GSM849125 ,
GSM849126 ,
GSM849127 ,
GSM849128 ,
GSM849131 ,
GSM849132 ,
GSM849133 ,
GSM849134 ,
GSM849135 ,
GSM849136 ,
GSM849137 ,
GSM849138 ,
GSM849139 ,
GSM849140 ,
GSM849141 ,
GSM849142 ,
GSM849143 ,
GSM849144 ,
GSM849145 ,
GSM849146 ,
GSM849147 ,
GSM849148 ,
GSM849149 ,
GSM849150 ,
GSM849151 ,
GSM849152 ,
GSM849153 ,
GSM849154 ,
GSM849155 ,
GSM849156 ,
GSM849157 ,
GSM849158 ,
GSM849159 ,
GSM849160 ,
GSM849161 ,
GSM849162 ,
GSM849163 ,
GSM849164 ,
GSM849165 ,
GSM849166 ,
GSM849167 ,
GSM849168 ,
GSM849169 ,
GSM849170 ,
GSM849171 ,
GSM849172 ,
GSM849173 ,
GSM849174 ,
GSM849175 ,
GSM849176 ,
GSM849177 ,
GSM849178 ,
GSM849179 ,
GSM849180 ,
GSM849181 ,
GSM849182 ,
GSM849183 ,
GSM849184 ,
GSM849185 ,
GSM849186 ,
GSM849187 ,
GSM849188 ,
GSM849189 ,
GSM849190 ,
GSM849191 ,
GSM849192 ,
GSM849193 ,
GSM849194 ,
GSM849195 ,
GSM849196 ,
GSM849197 ,
GSM849198 ,
GSM849199 ,
GSM849200 ,
GSM849201 ,
GSM849202 ,
GSM849203 ,
GSM849204 ,
GSM849205 ,
GSM849206 ,
GSM849207 ,
GSM849208 ,
GSM849209 ,
GSM849210 ,
GSM849211 ,
GSM849212 ,
GSM849213 ,
GSM849214 ,
GSM849215 ,
GSM849216 ,
GSM849217 ,
GSM849218 ,
GSM849219 ,
GSM849220 ,
GSM849221 ,
GSM849222 ,
GSM849223 ,
GSM849224 ,
GSM849225 ,
GSM849226 ,
GSM849227 Series (2)
GSE21929 Specified Bacterial Species in Gingival Crevicular Fluid Predict Diversity of Unattached Subgingival Microbiota
GSE34439 Oral Samples (HOMIM-v.02); A Characterization of the Oral Microbiome in Allogeneic Stem Cell Transplant Patients
Data table header descriptions ID numeric ID
Name HOMIM Probe ID
SEQUENCE sequence of probe, 5'-3'
SPOT_ID
Data table ID Name SEQUENCE SPOT_ID 1
blank
blank
2
Buffer
control
3
oligo pool_1
control
4
oligo pool_10
control
5
oligo pool_100
control
6
16S Universal I_E29
CTGCTGCCTCCCGTAGG
16S Universal I_E29
7
16S Universal 10 I_E29
CTGCTGCCTCCCGTAGG
16S Universal 10 I_E29
8
16S Universal 100 I_E29
CTGCTGCCTCCCGTAGG
16S Universal 100 I_E29
9
Bacteroides heparinolyticus I_N91
CAAGGCACCCAGTATCAA
Bacteroides heparinolyticus I_N91
10
Bacteroides heparinolyticus II_X18
CCGGATAATTCGGTTGC
Bacteroides heparinolyticus II_X18
11
Bacteroidetes sp AU126 I_K76
AGATGCCTCTTCCGTTTAC
Bacteroidetes sp AU126 I_K76
12
Bacteroidetes sp AU126 II_X57
ACGTGTCTCACTTTACTCC
Bacteroidetes sp AU126 II_X57
13
Bacteroidetes sp X083 I_AA81
GCCACACTTTAATCGCAC
Bacteroidetes sp X083 I_AA81
14
Bacteroidetes sp X083 II_X17
GCCCATACATTTGACAGC
Bacteroidetes sp X083 II_X17
15
Capnocytophaga sp BM058_BU084 I_O08
CTAAGTACGTCAGTCTCC
Capnocytophaga sp BM058_BU084 I_O08
16
Capnocytophaga Cluster II_AA89
AAGGCTTCTCCCTCGACTT
Capnocytophaga Cluster II_AA89
17
Capnocytophaga ochracea_BB167 I_Y83
ATTAGAGGGCTCGACCTTAC
Capnocytophaga ochracea_BB167 I_Y83
18
Capnocytophaga sp AA032 I_O14
TCAAACTACGCGTTAGCC
Capnocytophaga sp AA032 I_O14
19
Capnocytophaga sp AA032 II_X26
CAACAGTTCCAAAGGCAG
Capnocytophaga sp AA032 II_X26
20
Capnocytophaga sp BB167 I_O09
GCCGTGCTCTTATACCAT
Capnocytophaga sp BB167 I_O09
421 33 Kbytes .Supplementary data files not provided
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