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Status
Public on Apr 02, 2002
Title
Yeast Splicing Chip v3.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. All oligos are custom designed 40-mers. The array contains 864 unique elements that are each printed four times.
Contributor(s)
Clark TA , Sugnet CW , Ares M Submission date
Mar 15, 2002
Last update date
May 26, 2005
Contact name
Manuel Ares
E-mail(s)
ares@biology.ucsc.edu Phone
831 459-4628
Organization name
UC Santa Cruz
Street address
City
Santa Cruz
State/province
CA
ZIP/Postal code
95064
Country
USA
Samples (36)
GSM1461 , GSM1462 , GSM1463 , GSM1464 , GSM1465 , GSM1466
GSM1467 ,
GSM1468 ,
GSM1469 ,
GSM1470 ,
GSM1471 ,
GSM1472 ,
GSM1473 ,
GSM1474 ,
GSM1475 ,
GSM1476 ,
GSM1477 ,
GSM1478 ,
GSM1479 ,
GSM1480 ,
GSM1481 ,
GSM1482 ,
GSM1483 ,
GSM1484 ,
GSM1485 ,
GSM1486 ,
GSM1487 ,
GSM1488 ,
GSM1489 ,
GSM1490 ,
GSM1491 ,
GSM1492 ,
GSM1493 ,
GSM1494 ,
GSM1495 ,
GSM1496 Series (1)
GSE35 Non-essential mRNA processing factors
Data table header descriptions ID Spot_Num Spot number within each block
ORF Yeast ORF
SPOT_ID Name Feature Name
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
Data table ID Spot_Num ORF SPOT_ID Name Type Block Row Column 1
1
Cy3
Cy3
Pos.Control
1
1
1
2
2
Printing_Buffer
Printing_Buffer
Neg.Control
1
2
1
3
3
BioB
BioB
Control
1
3
1
4
4
BioC
BioC
Control
1
4
1
5
5
BioD
BioD
Control
1
5
1
6
6
Cre
Cre
Control
1
6
1
7
7
cheY
cheY
Control
1
7
1
8
8
cheZ
cheZ
Control
1
8
1
9
9
fliM
fliM
Control
1
9
1
10
10
htrE
htrE
Control
1
10
1
11
11
lamB
lamB
Control
1
11
1
12
12
mdoG
mdoG
Control
1
12
1
13
13
mdoH
mdoH
Control
1
13
1
14
14
mrdA
mrdA
Control
1
14
1
15
15
mrdB
mrdB
Control
1
15
1
16
16
ompC
ompC
Control
1
16
1
17
17
ompF
ompF
Control
1
17
1
18
18
mrcA
mrcA
Control
1
18
1
19
19
ompB
ompB
Control
1
19
1
20
20
ompA
ompA
Control
1
20
1
3456 128 Kbytes .Supplementary data files not provided
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