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Platform GPL105 Query DataSets for GPL105
Status Public on Apr 02, 2002
Title Yeast Splicing Chip v3.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
 
Description This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. All oligos are custom designed 40-mers. The array contains 864 unique elements that are each printed four times.
Keywords = Splicing
 
Contributor(s) Clark TA, Sugnet CW, Ares M
Submission date Mar 15, 2002
Last update date May 26, 2005
Contact name Manuel Ares
E-mail(s) ares@biology.ucsc.edu
Phone 831 459-4628
Organization name UC Santa Cruz
Street address
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Samples (36) GSM1461, GSM1462, GSM1463, GSM1464, GSM1465, GSM1466 
Series (1)
GSE35 Non-essential mRNA processing factors

Data table header descriptions
ID
Spot_Num Spot number within each block
ORF Yeast ORF
SPOT_ID
Name Feature Name
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block

Data table
ID Spot_Num ORF SPOT_ID Name Type Block Row Column
1 1 Cy3 Cy3 Pos.Control 1 1 1
2 2 Printing_Buffer Printing_Buffer Neg.Control 1 2 1
3 3 BioB BioB Control 1 3 1
4 4 BioC BioC Control 1 4 1
5 5 BioD BioD Control 1 5 1
6 6 Cre Cre Control 1 6 1
7 7 cheY cheY Control 1 7 1
8 8 cheZ cheZ Control 1 8 1
9 9 fliM fliM Control 1 9 1
10 10 htrE htrE Control 1 10 1
11 11 lamB lamB Control 1 11 1
12 12 mdoG mdoG Control 1 12 1
13 13 mdoH mdoH Control 1 13 1
14 14 mrdA mrdA Control 1 14 1
15 15 mrdB mrdB Control 1 15 1
16 16 ompC ompC Control 1 16 1
17 17 ompF ompF Control 1 17 1
18 18 mrcA mrcA Control 1 18 1
19 19 ompB ompB Control 1 19 1
20 20 ompA ompA Control 1 20 1

Total number of rows: 3456

Table truncated, full table size 128 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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