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Platform GPL10575 Query DataSets for GPL10575
Status Public on Jun 24, 2010
Title Porphyromonas gingivalis version 2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Porphyromonas gingivalis
Manufacturer Pathogen Functional Genomics Resource Center
Manufacture protocol see
http://pfgrc.jcvi.org/index.php/microarray/array_description/porphyromonas_gingivalis/version2.html
 
 
Contributor(s) stafford gp
Submission date Jun 22, 2010
Last update date Jun 24, 2010
Contact name graham stafford
Organization name University of Sheffield
Street address School of Clinical Dentistry
City Sheffield
ZIP/Postal code s10 sta
Country United Kingdom
 
Samples (24) GSM567879, GSM567880, GSM567881, GSM567882, GSM567883, GSM567884 
Series (1)
GSE23021 Identification of bistable populations of Porphyromonas gingivalis that differ in epithelial cell invasion.

Data table header descriptions
ID
Row
Column
Meta Row
Meta Column
Sub Row
Sub Column
Oligo ID
ORF TIGR derived gene identifier for each oligo
SEQUENCE of 70mer oligo on slide
GC%
Internal Repeat Score
Self-Annealing Score
Design Strain describes P.ginigvlais W83- the source strain
Design Target TIGR derived gene identifier for each oligo
Common Name of Design Target
Gene Symbol if available
SPOT_ID spot identifier

Data table
ID Row Column Meta Row Meta Column Sub Row Sub Column Oligo ID ORF SEQUENCE GC% Internal Repeat Score Self-Annealing Score Design Strain Design Target Common Name of Design Target Gene Symbol SPOT_ID
1 1 1 1 1 1 1 2PG00001_C_1 PG1169 TGTTTTATAGTAAAACATTCGGTGGCTGTTACGATTCATTCGACTTCAGCATTTTCGTTACCTTTGCCAA 37.14 79 29 W83 PG1169 hypothetical protein
2 1 2 1 1 1 2 2PG00001_G_1 PG0039 GAGCCGGTTTCGCTTGGCTGTTATCAATTCTGCGAAGAAGTCCAAGTTCAAAACAATCCGAATGAAGTTT 42.86 111 30 W83 PG0039 hypothetical protein
3 1 3 1 1 1 3 2PG00001_K_1 PG1166 TATGCCTTGGAAAAACGGAAAAAGATGGCGGTTTATTCCATTGAAAAGCGGACGAATATGACTAAATTTG 37.14 80 31 W83 PG1166 hypothetical protein
4 1 4 1 1 1 4 2PG00001_O_1 PG0661 CTGCCTTGCTGCTATTTCTCGTGTAGATGAAAAGATAGCCAAGAGGGCTATTTGTGTATCTTTGTCTATA 40 104 31 W83 PG0661 hypothetical protein
5 1 5 1 1 1 5 2PG00001_D_1 PG1463 GAAGACGTGATGAACCATGACGATGAAGAACAGGTCATTTTCGTTGAAGGAGAAACGCTATTGGATACCT 42.86 78 30 W83 PG1463 hypothetical protein
6 1 6 1 1 1 6 2PG00001_H_1 PG0652 TAATAGAACCCCTGAGAAGCATGAGCGTTTGCCTCAATATGAATCCTTCCGAAGAATACGACTTTATGTT 40 75 30 W83 PG0652 conserved hypothetical protein
7 1 7 1 1 1 7 2PG00001_L_1 PG1556 TGCCGTGGCACTGATGGTTGCCCTCGTCACCAAATTCAACATGACCGAAGTCTTCAGCAAGGAAGACTAC 51.43 73 29 W83 PG1556 conserved hypothetical protein
8 1 8 1 2 1 1 2PG00001_C_1 PG1169 TGTTTTATAGTAAAACATTCGGTGGCTGTTACGATTCATTCGACTTCAGCATTTTCGTTACCTTTGCCAA 37.14 79 29 W83 PG1169 hypothetical protein
9 1 9 1 2 1 2 2PG00001_G_1 PG0039 GAGCCGGTTTCGCTTGGCTGTTATCAATTCTGCGAAGAAGTCCAAGTTCAAAACAATCCGAATGAAGTTT 42.86 111 30 W83 PG0039 hypothetical protein
10 1 10 1 2 1 3 2PG00001_K_1 PG1166 TATGCCTTGGAAAAACGGAAAAAGATGGCGGTTTATTCCATTGAAAAGCGGACGAATATGACTAAATTTG 37.14 80 31 W83 PG1166 hypothetical protein
11 1 11 1 2 1 4 2PG00001_O_1 PG0661 CTGCCTTGCTGCTATTTCTCGTGTAGATGAAAAGATAGCCAAGAGGGCTATTTGTGTATCTTTGTCTATA 40 104 31 W83 PG0661 hypothetical protein
12 1 12 1 2 1 5 2PG00001_D_1 PG1463 GAAGACGTGATGAACCATGACGATGAAGAACAGGTCATTTTCGTTGAAGGAGAAACGCTATTGGATACCT 42.86 78 30 W83 PG1463 hypothetical protein
13 1 13 1 2 1 6 2PG00001_H_1 PG0652 TAATAGAACCCCTGAGAAGCATGAGCGTTTGCCTCAATATGAATCCTTCCGAAGAATACGACTTTATGTT 40 75 30 W83 PG0652 conserved hypothetical protein
14 1 14 1 2 1 7 2PG00001_L_1 PG1556 TGCCGTGGCACTGATGGTTGCCCTCGTCACCAAATTCAACATGACCGAAGTCTTCAGCAAGGAAGACTAC 51.43 73 29 W83 PG1556 conserved hypothetical protein
15 1 15 1 3 1 1 2PG00001_C_1 PG1169 TGTTTTATAGTAAAACATTCGGTGGCTGTTACGATTCATTCGACTTCAGCATTTTCGTTACCTTTGCCAA 37.14 79 29 W83 PG1169 hypothetical protein
16 1 16 1 3 1 2 2PG00001_G_1 PG0039 GAGCCGGTTTCGCTTGGCTGTTATCAATTCTGCGAAGAAGTCCAAGTTCAAAACAATCCGAATGAAGTTT 42.86 111 30 W83 PG0039 hypothetical protein
17 1 17 1 3 1 3 2PG00001_K_1 PG1166 TATGCCTTGGAAAAACGGAAAAAGATGGCGGTTTATTCCATTGAAAAGCGGACGAATATGACTAAATTTG 37.14 80 31 W83 PG1166 hypothetical protein
18 1 18 1 3 1 4 2PG00001_O_1 PG0661 CTGCCTTGCTGCTATTTCTCGTGTAGATGAAAAGATAGCCAAGAGGGCTATTTGTGTATCTTTGTCTATA 40 104 31 W83 PG0661 hypothetical protein
19 1 19 1 3 1 5 2PG00001_D_1 PG1463 GAAGACGTGATGAACCATGACGATGAAGAACAGGTCATTTTCGTTGAAGGAGAAACGCTATTGGATACCT 42.86 78 30 W83 PG1463 hypothetical protein
20 1 20 1 3 1 6 2PG00001_H_1 PG0652 TAATAGAACCCCTGAGAAGCATGAGCGTTTGCCTCAATATGAATCCTTCCGAAGAATACGACTTTATGTT 40 75 30 W83 PG0652 conserved hypothetical protein

Total number of rows: 10752

Table truncated, full table size 1448 Kbytes.




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