NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL10590 Query DataSets for GPL10590
Status Public on Jul 01, 2010
Title JCVI PFGRC Staphylococcus aureus 10K v3 array designed primarily based on strain COL
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Staphylococcus aureus
Manufacturer JCVI PFGRC
Manufacture protocol 3QSA, with arrayer LUCIDEA, mode Normal, replicates 2, repeats 1, slide_dips 75, machine cycles 1280640, pen id 10180, pen cycles -1, operator Jon, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 3929 oligonucleotides, has 10800 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 24, 2010
Last update date Jul 01, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain Mu50 Target map of strain Mu50
Strain MW2 Target map of strain MW2
Strain N315 Target map of strain N315
Strain COL Target map of strain COL
ORF ORF Name
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain Mu50 Strain MW2 Strain N315 Strain COL ORF SPOT_ID
3SA00001_A_1 GGTAATAGCTATTATCATTTTTGAATTAATTATATTAATGTGTTTAGCAATAGCACTGGAGGTGTTGTAA 27.14 34 104 Obsolete Obsolete Obsolete --Obsolete
3SA00001_A_10 CTTGTCTTTGATCGCCAAACATTATCAATCCCACCCTTATATTTATTTATCTTTAATATATAACAACATT 27.14 33 80 N315 SAP030 hypothetical protein SAP030::70::100.0::5.4E-11::+ SAP030
3SA00001_A_11 TGAAATGCTGATGGTTGTATTAACAATCATTGGTTTAGTATTGATTAGTACTCAAGACCATAAAAAATAA 27.14 32 100 MW2 MW2072 hypothetical protein MW2072::70::100.0::7.4E-11::+ MW2072
3SA00001_A_12 ATCTAGTTCTCTTAATTAAGTTCTTATCAAAAAAACTTATCCACCTGTACTGGATAGATATGACCATCAA 30.0 31 100 Mu50 SAV0396 hypothetical protein SAV0396::70::100.0::5.4E-11::+ SAV0396
3SA00001_A_13 CACTTCTTTTTAGACATTGTCGAATCGAAGATTGAAACAAAGCGAACTGCGAAAAGTTTTAAAGATATTT 31.43 31 98 MW2 MW1896 hypothetical protein MW1896::70::100.0::7.1E-11::+ MW1896
3SA00001_A_14 ATATATTTAATATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATT 20.0 33 136 Mu50 SAV0915 hypothetical protein SAV0915::70::100.0::5.4E-11::+ SACOL0910::70::97.14286::3.5E-10::+ SAV0915
3SA00001_A_15 AGCGCGTTTATACAGAAATGTATTTTCTGTGATGTTACGCAATGATTTAAAGCGTTATATAGATTTTTAG 30.0 31 102 MW2 MW2614 hypothetical protein MW2614::70::100.0::7.1E-11::+ MW2614
3SA00001_A_16 TATACGCGAGTATGATTTAACACCTTCCGCGTTAGGGAAATGGATAAAGCAACATCAAAACACAGGTTGA 40.0 28 80 MW2 MW0050 truncated transposase MW0050::70::100.0::5.4E-11::+ MW0050
3SA00001_A_17 CGGACGATTGTGTTCTAATCATAGAGGCTCAATGGAAGAACTACGGGACGAAAACCAGACGATAACTCAA 44.29 31 81 MW2 MW2135 hypothetical protein MW2135::70::100.0::6.9E-11::+ MW2135
3SA00001_A_18 GATGACAACCAATTACTATGTTGAATCTATAAAATTAAAATTGAATTTCATTATGAATATCGATATAATG 21.43 34 122 COL SACOL0933 hypothetical protein SACOL0933::70::100.0::5.4E-11::+ SACOL0933
3SA00001_A_19 TTAATTATTCTTTGTATGATACCTTAAATACCTTATTACATATCCCATATGAAAACGGCTTTTTTATTAT 22.86 32 97 Mu50 SAV1299 hypothetical protein SAV1299::70::100.0::6.6E-11::+ MW1181::70::98.57143::1.7E-10::+ SAS038::70::100.0::6.6E-11::+ SAV1299
3SA00001_A_2 GTATATAAAAAATGCTTCTGCAATAGATGCAATAAACATGCAATACAATATGGAGGCGAAGTAAATGAAA 30.0 33 84 COL SACOL2595 hypothetical protein SACOL2595::70::100.0::5.5E-11::+ SACOL2595
3SA00001_A_20 TCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATG 32.86 32 80 COL SACOL1061 hypothetical protein SACOL1061::70::100.0::5.4E-11::+ SACOL1061
3SA00001_A_21 TCCATATATGCTTTGTAGTCAAAACTGCTAGCGGATATTGTTATCTTAACAAACGTGAAGCTCAAGCAGC 38.57 30 94 COL SACOL1713 hypothetical protein SAV1666::70::100.0::6.6E-11::+ MW1610::70::100.0::6.6E-11::+ SAS051::70::100.0::6.6E-11::+ SACOL1713::70::100.0::5.9E-11::+ SACOL1713
3SA00001_A_22 GATGACTATTAAAGTGCGAAAAACAAATAAAAAAGAGAAAATAGAATTTTTAATAGGGACGTTTATAATT 22.86 33 89 COL SACOL1334 hypothetical protein SACOL1334::70::100.0::5.4E-11::+ SACOL1334
3SA00001_A_23 AGGCGATGTGAAAGTTAAAGAGCGGGAGATAGAGATATTAAGAAGTAGATTGAGACATTTTGAAGGTTAA 35.71 32 48 Mu50 SAV0883 hypothetical protein SAV0883::70::100.0::6.6E-11::+ SAV0883
3SA00001_A_24 AAAATACGAACGAATGAGCGATATGATAATATAGATAAGAATGATTTTAATTTAGGAGGCCTTTATGGTG 30.0 33 78 COL SACOL1890 hypothetical protein SACOL1890::70::100.0::5.4E-11::+ SACOL1890
3SA00001_A_3 ATGAAAGTTGCCTTTTTATTTTTGGTAAAAGTTCATGCGTCAGTGAATTGTGTAAGTTTTTCAAAAAGTA 28.57 34 106 Mu50 SAV1477 hypothetical protein SAV1477::70::100.0::7.7E-11::+ SAS046::70::100.0::7.7E-11::+ SAV1477
3SA00001_A_4 CAATTAAAAAAGCATCAAACAGTAATATGCTGCTTGATGCAATATGGTATTGGTTAAAATGTATTGTCTC 30.0 34 126 Obsolete Obsolete Obsolete --Obsolete
3SA00001_A_5 CTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGA 22.86 33 103 MW2 MW2436 hypothetical protein MW2436::70::100.0::7.7E-11::+ MW2436

Total number of rows: 5056

Table truncated, full table size 1133 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap