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Platform GPL10596 Query DataSets for GPL10596
Status Public on Jul 01, 2010
Title JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain MW2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Staphylococcus aureus
Manufacturer JCVI PFGRC
Manufacture protocol 9QSA, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 4528 oligonucleotides, has 16416 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 24, 2010
Last update date Jul 01, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain pLW043 Target map of strain pLW043
Strain USA300 Target map of strain USA300
Strain MRSA252 Target map of strain MRSA252
Strain MSSA476 Target map of strain MSSA476
Strain COL Target map of strain COL
Strain Mu50 Target map of strain Mu50
Strain MW2 Target map of strain MW2
Strain N315 Target map of strain N315
ORF ORF Name
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain pLW043 Strain USA300 Strain MRSA252 Strain MSSA476 Strain COL Strain Mu50 Strain MW2 Strain N315 ORF SPOT_ID
9QSA00001_A_10 AATACATAAAGATGAAGCTACAACTAAAGTTGTCAGTGATAACACGGAACCGCCGATTGAATCAAAAGGC 38.57 29 72 Mu50 SAV0125 hypothetical protein SAUSA300_0128::70::97.14286::1.1E-10::+ SAR0128::70::94.28571::8.8E-10::+ SAS0100::70::95.71428::2.8E-10::+ SACOL0110::70::97.14286::1.1E-10::+ SAV0125::70::100.0::1.7E-11::+ MW0099::70::95.71428::2.8E-10::+ SA0121::70::100.0::1.7E-11::+ SAV0125
9QSA00001_A_11 GATATGTATGTGGTACCACCATCAAGACTTATCAATGAAATACCTTACGCAATGAAACAATTAGAAAGTT 32.86 31 88 Mu50 SAV0007 hypothetical protein SAUSA300_0007::70::98.57143::1.2E-10::+ SAR0007::70::98.57143::1.2E-10::+ SAS0007::70::98.57143::1.2E-10::+ SACOL0007::70::98.57143::6.4E-11::+ SAV0007::70::100.0::4.3E-11::+ MW0007::70::98.57143::1.1E-10::+ SA0007::70::100.0::4.3E-11::+ SAV0007
9QSA00001_A_12 TAGACTGTGACATCATAACTCATTTAAGAACTTCGCTTATTAATTTTCTACCAATACAATCCCTTCTAAG 31.43 31 89 Mu50 SAV0127 hypothetical protein SAR0130a::70::92.85714::1.0E-8::+ SAS0101a::70::97.14286::4.6E-10::+ SAV0127::70::100.0::6.9E-11::+ MW0101::70::97.14286::4.5E-10::+ SAS004::70::100.0::6.9E-11::+ SAV0127
9QSA00001_A_13 TTAGAATTAGTGAGACAATTACAATTTTTTATAAATGAACGTATTATACCGATAATCCCACAACAAGGCT 28.57 30 114 Mu50 SAV0008 histidine ammonia-lyase hutH SAUSA300_0008::70::98.57143::2.5E-10::+ SAR0008::70::98.57143::2.5E-10::+ SAS0008::70::98.57143::2.5E-10::+ SACOL0008::70::98.57143::2.5E-10::+ SAV0008::70::100.0::9.7E-11::+ MW0008::70::98.57143::2.5E-10::+ SA0008::70::100.0::9.7E-11::+ SAV0008
9QSA00001_A_14 TAGCAACATTAAGATTGTTAGAAATCATTAAAAAATATAATAGTCATATAAAACGTTTTATCTTTGCTTC 21.43 34 112 MW2 MW0102 hypothetical protein SAUSA300_0130::70::98.57143::1.6E-10::+ SAS0102::70::100.0::6.0E-11::+ SACOL0113::70::98.57143::1.6E-10::+ SAV0128::70::100.0::6.0E-11::+ MW0102::70::100.0::6.0E-11::+ SA0123::70::100.0::6.0E-11::+ MW0102
9QSA00001_A_15 GGATTTAGTGCAAGCAAAACATATGATATAGAAGTTTGGTTACCAAGCTACAATGATTATAAAGAAATTA 28.57 31 108 Mu50 SAV0009 seryl-tRNA synthetase serS SAUSA300_0009::70::98.57143::2.2E-10::+ SAR0009::70::98.57143::2.2E-10::+ SAS0009::70::98.57143::2.2E-10::+ SACOL0009::70::98.57143::2.2E-10::+ SAV0009::70::100.0::8.4E-11::+ MW0009::70::98.57143::2.2E-10::+ SA0009::70::100.0::8.4E-11::+ SAV0009
9QSA00001_A_16 ATGCACTCGAAGAAGTGAGAAAAGGCTATTACCCAATTAAACGTGCGATTGACTTAGTATTAAGTATCGT 37.14 29 75 Mu50 SAV0129 similar to capsular polysaccharide biosynthesis SAV0129::70::100.0::2.0E-11::+ SA0124::70::100.0::2.0E-11::+ SAV0129
9QSA00001_A_17 TTGGTATTGTGGCTTCGTCTCAAAACTTTAGTATTTTAGAAATTATCTTGTTATGTCTTGTTATATATGC 28.57 30 69 Mu50 SAV0010 amino acid permease SAUSA300_0010::70::98.57143::6.1E-11::+ SAR0010::70::97.14286::1.8E-10::+ SAS0010::70::98.57143::6.1E-11::+ SACOL0010::70::98.57143::6.1E-11::+ SAV0010::70::100.0::2.0E-11::+ MW0010::70::98.57143::6.1E-11::+ SA0010::70::100.0::2.0E-11::+ SAV0010
9QSA00001_A_18 ATCTAGTTATCGAAAAATTAATGTCATGTATTACAGATAGCATTATTTGTGTTTCAGATTTCGATAAACA 25.71 32 141 Mu50 SAV0130 hypothetical protein SAUSA300_0132::70::95.71428::1.4E-9::+ SAR0132::70::97.14286::5.3E-10::+ SAS0104::70::95.71428::1.4E-9::+ SACOL0115::70::95.71428::1.4E-9::+ SAV0130::70::100.0::7.7E-11::+ MW0104::70::95.71428::1.4E-9::+ SA0125::70::100.0::7.7E-11::+ SAV0130
9QSA00001_A_19 TTTATCTATAATCACGCGTAGTTTAACTATTACAATTATTAGTGGGATTGTTATCATGGCAACATTACGA 30.0 31 94 Mu50 SAV0011 hypothetical protein SAUSA300_0011::70::98.57143::8.2E-11::+ SAR0011::70::98.57143::8.2E-11::+ SAS0011::70::98.57143::8.2E-11::+ SACOL0011::70::98.57143::8.2E-11::+ SAV0011::70::100.0::3.2E-11::+ MW0011::70::98.57143::8.2E-11::+ SAS001::70::100.0::3.2E-11::+ SAV0011
9QSA00001_A_2 TAGAAGATGTTGAAGGGGTTATGGCCATTGACGATATAGCTCAAGTCGAAGGTTTAGACATGATAGTCGA 41.43 30 86 Mu50 SAV0122 hypothetical protein SAUSA300_0124::70::98.57143::9.7E-11::+ SAR0125::70::98.57143::9.7E-11::+ SAS0096::70::98.57143::9.7E-11::+ SACOL0106::70::98.57143::9.7E-11::+ SAV0122::70::100.0::3.5E-11::+ MW0095::70::98.57143::9.8E-11::+ SA0118::70::100.0::3.5E-11::+ SAV0122
9QSA00001_A_20 ATATTACTTTGTTTTACCTTTTATAATATCAACTACTATTTATTCCAATTAAGCGACCTTGATGCCGTAC 28.57 31 84 Mu50 SAV0131 hypothetical protein SAUSA300_0133::70::98.57143::2.1E-10::+ SAR0133::70::94.28571::3.8E-9::+ SAS0105::70::97.14286::5.6E-10::+ SACOL0116::70::98.57143::2.1E-10::+ SAV0131::70::100.0::8.2E-11::+ MW0105::70::97.14286::5.6E-10::+ SA0126::70::100.0::8.2E-11::+ SAV0131
9QSA00001_A_21 CATATTTTTAAAAATTTAGAAACGAAAGTCTTAACGATGGGGTTCATAGATGATTTGCTATATCCGGACG 32.86 30 83 Mu50 SAV0012 putative homoserine-o-acetyltransferase SAUSA300_0012::70::94.28571::3.0E-9::+ SAR0012::70::92.85714::7.8E-9::+ SAS0012::70::94.28571::3.0E-9::+ SACOL0012::70::94.28571::3.0E-9::+ SAV0012::70::100.0::6.2E-11::+ MW0012::70::94.28571::3.0E-9::+ SA0011::70::100.0::6.2E-11::+ SAV0012
9QSA00001_A_22 ACTATATGACTGCATTTTGGAATATTGTTAACTGGAAAAAAGTTGATGAATTATACCAAGCAGCAAAATA 28.57 31 112 MW2 MW0107 superoxide dismutase sodM SAUSA300_0135::70::98.57143::4.5E-11::+ SAR0135::70::100.0::1.8E-11::+ SAS0107::70::100.0::1.8E-11::+ SACOL0118::70::98.57143::4.5E-11::+ SAV0133::70::100.0::1.8E-11::+ MW0107::70::100.0::1.8E-11::+ SA0128::70::100.0::1.8E-11::+ MW0107
9QSA00001_A_23 ATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGGTTTTACGAAAATTTAAAATCG 24.29 34 121 Mu50 SAV0013 hypothetical protein SAUSA300_0013::70::98.57143::1.5E-10::+ SAR0013::70::98.57143::1.6E-10::+ SAS0013::70::98.57143::1.6E-10::+ SACOL0013::70::98.57143::1.5E-10::+ SAV0013::70::100.0::6.2E-11::+ MW0013::70::98.57143::1.5E-10::+ SA0012::70::100.0::6.2E-11::+ SAV0013
9QSA00001_A_24 TCATATGAGTCAACAAGACCATATGAATCAGAACACACACATGAACCAACAGCCACAAATACAACAAGGT 38.57 33 66 Mu50 SAV0134 hypothetical protein SAUSA300_0136::70::95.71428::6.1E-10::+ SAS0108::70::95.71428::6.1E-10::+ SACOL0119::70::95.71428::6.1E-10::+ SAV0134::70::100.0::2.6E-11::+ MW0108::70::95.71428::6.1E-10::+ SA0129::70::100.0::2.6E-11::+ SAV0134
9QSA00001_A_3 CCCGAAAAATTCTACACAGATCATGGAAGTGACTTTACTTCACATCATATGGAACAAGTCGCTATTGATT 37.14 30 104 MSSA476 pSAS15 pseudo VRA0051::70::100.0::9.3E-11::+ SAR1827::70::91.42857::2.8E-8::+ pSAS15::70::100.0::9.3E-11::+ SAP014::70::100.0::9.3E-11::+ pSAS15
9QSA00001_A_5 TCAATAGACCATGGCTAACTATTATTATGGATGACTATAGTCGTGCAATTGCAGGCTATTTCTTAAGTTT 34.29 30 112 MSSA476 pSAS15 pseudo VRA0051::70::100.0::9.3E-11::+ SAR1827::70::94.28571::4.2E-9::+ pSAS15::70::100.0::9.3E-11::+ SAP014::70::100.0::9.3E-11::+ pSAS15
9QSA00001_A_6 TTTGAAATTTATCGTTATAAGGACAATCCATATTCATTTGAAAAAGTTTCAATTTCGAGACAGGACACAA 28.57 32 104 Mu50 SAV0123 probable diaminopimelate decarboxylase protein SAUSA300_0125::70::97.14286::5.4E-10::+ SAR0126::70::97.14286::5.4E-10::+ SAS0097::70::98.57143::2.1E-10::+ SACOL0107::70::97.14286::5.4E-10::+ SAV0123::70::100.0::7.9E-11::+ MW0096::70::98.57143::2.1E-10::+ SA0119::70::100.0::7.9E-11::+ SAV0123
9QSA00001_A_7 CATTACCTATATTAACTGGTATCAAAATCGATGCGAAAGAACATGAAGTTATACTAACTGGTTCAGACTC 34.29 29 83 Mu50 SAV0002 DNA polymerase III subunit beta dnaN SAUSA300_0002::70::98.57143::1.9E-10::+ SAR0002::70::97.14286::5.1E-10::+ SAS0002::70::98.57143::1.9E-10::+ SACOL0002::70::98.57143::1.9E-10::+ SAV0002::70::100.0::7.4E-11::+ MW0002::70::98.57143::1.9E-10::+ SA0002::70::100.0::7.4E-11::+ SAV0002

Total number of rows: 5087

Table truncated, full table size 1503 Kbytes.




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