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Platform GPL10632 Query DataSets for GPL10632
Status Public on Jul 01, 2010
Title JCVI PFGRC Mycobacterium tuberculosis 16K v5 array designed primarily based on strain H37Rv
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mycobacterium tuberculosis
Manufacturer JCVI PFGRC
Manufacture protocol 5QMT, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 4735 oligonucleotides, has 16416 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 28, 2010
Last update date Nov 12, 2013
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (7) GSM1261179, GSM1261180, GSM1261182, GSM1261183, GSM1261184, GSM1261185 
Series (1)
GSE47640 Transcriptome of phosphomimetic and phosphoablative kasB mutants of Mycobacterium tuberculosis

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain CDC1551 Target map of strain CDC1551
Strain H37Rv Target map of strain H37Rv
ORF ORF Name
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain CDC1551 Strain H37Rv ORF SPOT_ID
5QMT00001_A_1 GAGTCTGGGTACCGGGTCGCCCGCCGCCGACAGGCTCGACGCCACCCACGAGCGTCGGCGTGAGGTCATT 71.43 31 100 H37Rv Rv3599c hypothetical protein Rv3599c::70::100.0::6.0E-11::+ Rv3599c
5QMT00001_A_10 ACTGGAGTTGCTCAACCAGCTGTGGCAGCTGGTGTCGCTGCGTCTGAACTTTTTCACCCCGACGAAGAAG 55.71 30 88 CDC1551 MT0773.1 hypothetical protein MT0773.1::70::100.0::3.7E-11::+ Rv0749A::70::98.57143::9.3E-11::+ MT0773.1
5QMT00001_A_11 TCATCTGCCCCACGCGTACCGACCCGGACCGACTACGCGAGGCGGCCATATCGCTAGCCCTGTGGCGCCG 70.0 31 114 CDC1551 MT3510.1 hypothetical protein MT3510.1::70::100.0::5.3E-11::+ MT3510.1
5QMT00001_A_12 TCCCCACACCACCGCCAAGCTGGCATTACGCCGCCGCATGCGCAAAAAGCTGACCCCACTCCCGCCGAGC 67.14 31 69 CDC1551 MT1822 hypothetical protein MT1822::70::100.0::3.7E-11::+ MT1822
5QMT00001_A_13 CATCGCCGCAACAACTAGTGCGCATGGTTCTGGATCAGGTCGTCAGTCGTAAGGCTGGGGCCGTGCCAAC 60.0 31 84 CDC1551 MT2988.1 hypothetical protein MT2988.1::70::100.0::5.3E-11::+ MT2988.1
5QMT00001_A_14 GTCGCTTACATAGACGAGTCCGGCAATACCGGAGACCCCGCCAACGGCGGATCCATGACTTTCGCTCTAG 58.57 29 88 CDC1551 MT0009 hypothetical protein MT0009::70::100.0::3.7E-11::+ MT0009
5QMT00001_A_15 GCACCGTGGTCAGCCGCGCCAGGATCGGTCGGCAATGGCACCACCGGAGCAGGCGAAAGGTACCCGGTTC 68.57 31 114 CDC1551 MT3449.2 hypothetical protein MT3449.2::70::100.0::5.3E-11::+ MT3449.2
5QMT00001_A_16 AGGCAGCGGACAATCCGCGCTCACGGGTGCTGGCGTTTGCTAGTGCCGGTAATCTTCGAAAGAGTCGCTT 58.57 29 75 CDC1551 MT1070 hypothetical protein MT1070::70::100.0::3.7E-11::+ MT1070
5QMT00001_A_17 TGTGGGTCGCCAACGCCGTGCTGCCAGCCTCCGGCAAGCTCGACAGCATCACCGCGGAGCCGGTTGGCCG 71.43 32 125 CDC1551 MT1790 hypothetical protein MT1790::70::100.0::5.3E-11::+ MT1790
5QMT00001_A_18 ACCGGTATTCGGCATGGGTCAACTGCCCGCCTTCCAGTCGTCCTGTCCCAGGTATCCGTTCGTTGATGTT 57.14 31 78 CDC1551 MT0768.1 hypothetical protein MT0768.1::70::100.0::3.6E-11::+ MT0768.1
5QMT00001_A_19 GGGAGGTTGCTGCCGACGGCCGAACTCATTTCTCAACACGGCTCCAAGCCGGTAGGCATCGTCGCCACCG 64.29 30 106 CDC1551 MT2326 hypothetical protein MT2326::70::100.0::5.3E-11::+ MT2326
5QMT00001_A_2 TTCTCCGGATAGCTCATGCCCGCGACCTTAATCTTTTGGGGACGCCAGCTCCGCGCGAGTTAACGCAAAT 55.71 29 88 CDC1551 MT3378 hypothetical protein MT3378::70::100.0::3.7E-11::+ MT3378
5QMT00001_A_20 TCAAAAGCCACGAGTTCCCCGCCAAGAACGAGCGCCCGATAACCACTGAAGAGCTGTTGCGCTTCGCTGT 57.14 30 78 CDC1551 MT3972.1 hypothetical protein MT3972.1::70::100.0::3.6E-11::+ MT3972.1
5QMT00001_A_21 CGGTCTGAGCGCCAAGGGCGCCAAGACGTTCGCCGTTGACGCCGCGTCGGCCTACTGCCCGCAGTACGTG 70.0 30 115 H37Rv Rv1291c hypothetical protein MT1330::70::100.0::5.3E-11::+ Rv1291c::70::100.0::1.5E-11::+ Rv1291c
5QMT00001_A_22 TCTGGCGATGTTGGTGAGGTTTGTTCCTGCGCCCGTCCGTGGCGCGTTCGGGATCGTTGGGGTTGGCCGG 65.71 32 76 CDC1551 MT3207 hypothetical protein MT3207::70::100.0::3.6E-11::+ MT3207
5QMT00001_A_23 CTTCGCTGCACACCGGCTCGAAGAAGTCGGCCACGCGCATGAGGTAGTCGCGTCGTCACCGACACTATGG 62.86 30 90 CDC1551 MT2803.1 hypothetical protein MT2803.1::70::100.0::5.1E-11::+ MT2803.1
5QMT00001_A_24 TTGACATCGCTGCGGCAATCAACAACACTCGTCATATCCGATACCCTGGGTACTGGGTATTTGCGCCGGC 54.29 29 106 CDC1551 MT3135 hypothetical protein MT3135::70::100.0::3.6E-11::+ MT3135
5QMT00001_A_3 CCGCACCAACACCTTCCACCACCACGAGAAGCTGCTACGCCACAACGACGAGGACAACCACGACGATCCG 61.43 34 42 H37Rv Rv1572c hypothetical protein MT1622.1::70::100.0::1.2E-11::+ Rv1572c::70::100.0::4.8E-11::+ Rv1572c
5QMT00001_A_4 TGCTGCTAGCAGGATTTGTGATTCCGGTGCGCAAGAAGGGGGTTCGAGCCGATGGCATCCGTCGCCCAAC 60.0 28 70 CDC1551 MT2015 hypothetical protein MT2015::70::100.0::3.7E-11::+ MT2015
5QMT00001_A_5 ATGCGGTTTGGCTCCCTTGCGCTGGTCGCCTACGACTCGGCCATCAAGCATTCATGGCCACGCCCGTCGT 62.86 30 96 CDC1551 MT1978 hypothetical protein MT1978::70::100.0::5.4E-11::+ MT1978

Total number of rows: 5250

Table truncated, full table size 1027 Kbytes.




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