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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 26, 2010 |
| Title |
Rosetta/Merck Human RSTA Affymetrix 1.0 microarray, Custom CDF |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer web site
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| |
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| Description |
Human RSTA Affymetrix 1.0, Custom CDF microarray Merck.
Contains probesets for each transcript. Probeset is made of 4 to 20 distinct probes.
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| Web link |
http://www.rii.com
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| Contributor(s) |
Kulkarni A, Castle J |
| Submission date |
Jul 15, 2010 |
| Last update date |
Jul 26, 2010 |
| Contact name |
Amit V Kulkarni |
| E-mail(s) |
amit_kulkarni@merck.com
|
| Phone |
206-802-7352
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| Organization name |
Rosetta Inpharmatics / Merck Pharmaceuticals
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| Department |
Genomics
|
| Lab |
Array Design
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| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Samples (1053)
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GSM603107, GSM603108, GSM603109, GSM603110, GSM603111, GSM603112
GSM603113, GSM603114, GSM603115, GSM603116, GSM603117, GSM603118, GSM603119, GSM603120, GSM603121, GSM603122, GSM603123, GSM603124, GSM603125, GSM603126, GSM603127, GSM603128, GSM603129, GSM603130, GSM603131, GSM603132, GSM603133, GSM603134, GSM603135, GSM603136, GSM603137, GSM603138, GSM603139, GSM603140, GSM603141, GSM603142, GSM603143, GSM603144, GSM603145, GSM603146, GSM603147, GSM603148, GSM603149, GSM603150, GSM603151, GSM603152, GSM603153, GSM603154, GSM603155, GSM603156, GSM603157, GSM603158, GSM603159, GSM603160, GSM603161, GSM603162, GSM603163, GSM603164, GSM603165, GSM603166, GSM603167, GSM603168, GSM603169, GSM603170, GSM603171, GSM603172, GSM603173, GSM603174, GSM603175, GSM603176, GSM603177, GSM603178, GSM603179, GSM603180, GSM603181, GSM603182, GSM603183, GSM603184, GSM603185, GSM603186, GSM603187, GSM603188, GSM603189, GSM603190, GSM603191, GSM603192, GSM603193, GSM603194, GSM603195, GSM603196, GSM603197, GSM603198, GSM603199, GSM603200, GSM603201, GSM603202, GSM603203, GSM603204, GSM603205, GSM603206, GSM603207, GSM603208, GSM603209, GSM603210, GSM603211, GSM603212, GSM603213, GSM603214, GSM603215, GSM603216, GSM603217, GSM603218, GSM603219, GSM607104, GSM607105, GSM607106, GSM607107, GSM607108, GSM607109, GSM607110, GSM607111, GSM607112, GSM607113, GSM607114, GSM607115, GSM607116, GSM607117, GSM607118, GSM607119, GSM607120, GSM607121, GSM607122, GSM607123, GSM607124, GSM607125, GSM607126, GSM607127, GSM607128, GSM607129, GSM607130, GSM607131, GSM607132, GSM607133, GSM607134, GSM607135, GSM607136, GSM607137, GSM607138, GSM607139, GSM607140, GSM607141, GSM607142, GSM607143, GSM607144, GSM607145, GSM607146, GSM607147, GSM607148, GSM607149, GSM607150, GSM607151, GSM607152, GSM607153, GSM607154, GSM607155, GSM607156, GSM607157, GSM607158, GSM607159, GSM607160, GSM607161, GSM607162, GSM607163, GSM607164, GSM607165, GSM607166, GSM607167, GSM607168, GSM607169, GSM607170, GSM607171, GSM607172, GSM607173, GSM607174, GSM607175, GSM607176, GSM607177, GSM607178, GSM607179, GSM607180, GSM607181, GSM607182, GSM607183, GSM607184, GSM607185, GSM607186, GSM607187, GSM607188, GSM607189, GSM607190, GSM607191, GSM607192, GSM607193, GSM607194, GSM607195, GSM607196, GSM607197, GSM607198, GSM607199, GSM607200, GSM607201, GSM607202, GSM607203, GSM607204, GSM607205, GSM607206, GSM607207, GSM607208, GSM607209, GSM607210, GSM607211, GSM607212, GSM607213, GSM607214, GSM607215, GSM607216, GSM607217, GSM607218, GSM607219, GSM607220, GSM607221, GSM607222, GSM607223, GSM607224, GSM607225, GSM607226, GSM607227, GSM607228, GSM607229, GSM607230, GSM607231, GSM607232, GSM607233, GSM607234, GSM607235, GSM607236, GSM607237, GSM607238, GSM607239, GSM607240, GSM607241, GSM607242, GSM607243, GSM607244, GSM607245, GSM607246, GSM607247, GSM607248, GSM607249, GSM607250, GSM607251, GSM607252, GSM607253, GSM607254, GSM607255, GSM607256, GSM607257, GSM607258, GSM607259, GSM607260, GSM607261, GSM607262, GSM607263, GSM607264, GSM607265, GSM607266, GSM607267, GSM607268, GSM607269, GSM607270, GSM607271, GSM607272, GSM607273, GSM607274, GSM607275, GSM607276, GSM607277, GSM607278, GSM607279, GSM607280, GSM607281, GSM607282, GSM607283, GSM607284, GSM607285, GSM607286, GSM607287, GSM607288, GSM607289, GSM607290, GSM607291, GSM607292, GSM607293, GSM607294, GSM607295, GSM607296, GSM607297, GSM607298, GSM607299, GSM607300, GSM607301, GSM607302, GSM607303, GSM607304, GSM607305, GSM607306, GSM607307, GSM607308, GSM607309, GSM607310, GSM607311, GSM607312, GSM607313, GSM607314, GSM607315, GSM607316, GSM607317, GSM607318, GSM607319, GSM607320, GSM607321, GSM607322, GSM607323, GSM607324, GSM607325, GSM607326, GSM607327, GSM607328, GSM607329, GSM607330, GSM607331, GSM607332, GSM607333, GSM607334, GSM607335, GSM607336, GSM607337, GSM607338, GSM607339, GSM607340, GSM607341, GSM607342, GSM607343, GSM607344, GSM607345, GSM607346, GSM607347, GSM607348, GSM607349, GSM607350, GSM607351, GSM607352, GSM607353, GSM607354, GSM607355, GSM607356, GSM607357, GSM607358, GSM607359, GSM607360, GSM607361, GSM607362, GSM607363, GSM607364, GSM607365, GSM607366, GSM607367, GSM607368, GSM607369, GSM607370, GSM607371, GSM607372, GSM607373, GSM607374, GSM607375, GSM607376, GSM607377, GSM607378, GSM607379, GSM607380, GSM607381, GSM607382, GSM607383, GSM607384, GSM607385, GSM607386, GSM607387, GSM607388, GSM607389, GSM607390, GSM607391, GSM607392, GSM607393, GSM616704, GSM616705, GSM616706, GSM616707, GSM616708, GSM616709, GSM616710, GSM616711, GSM616712, GSM616713, GSM616714, GSM616715, GSM616716, GSM616717, GSM616718, GSM616719, GSM616720, GSM616721, GSM616722, GSM616723, GSM616724, GSM616725, GSM616726, GSM616727, GSM616728, GSM616729, GSM616730, GSM616731, GSM616732, GSM616733, GSM616734, GSM616735, GSM616736, GSM616737, GSM616738, GSM616739, GSM616740, GSM616741, GSM616742, GSM616743, GSM616744, GSM616745, GSM616746, GSM616747, GSM616748, GSM616749, GSM616750, GSM616751, GSM616752, GSM616753, GSM616754, GSM616755, GSM616756, GSM616757, GSM616758, GSM616759, GSM616760, GSM616761, GSM616762, GSM616763, GSM616764, GSM616765, GSM616766, GSM616767, GSM616768, GSM616769, GSM616770, GSM616771, GSM616772, GSM616773, GSM616774, GSM616775, GSM616776, GSM616777, GSM616778, GSM616779, GSM616780, GSM616781, GSM616782, GSM616783, GSM616784, GSM616785, GSM616786, GSM616787, GSM616788, GSM616789, GSM616790, GSM616791, GSM616792, GSM616793, GSM616794, GSM616795, GSM616796, GSM616797, GSM616798, GSM616799, GSM616800...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
|
| Series (6)
|
| GSE23314 |
Gene expression profiling of human atherosclerotic plaque |
| GSE24495 |
Gene expression profiling of human atherosclerotic plaque: Carotid plaque |
| GSE24702 |
Gene expression profiling of human atherosclerotic plaque: 290 peripheral plaques |
| GSE25097 |
Study of gene expression of human liver Hepatocellular carcinoma |
| GSE28709 |
EMT is the dominant program in human colon cancer (lung) |
| GSE28814 |
EMT is the dominant program in human colon cancer |
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| Relations |
| Alternative to |
GPL6793 (Alternative CDF) |
| Data table header descriptions |
| ID |
Rosetta generated unique probe identifier |
| EntrezGeneID |
Entrez Gene identifier for the gene represented |
| GeneSymbol |
Gene symbol for the gene represented |
| GB_ACC |
GenBank Accession number |
| PROBE_DERIVED_FROM_TRANSCRIPT |
Actual transcript sequence from which the probe was derieved |
| SPOT_ID |
|
| RosettaGeneModelID |
Rosetta internal gene identifier. |
| Data table |
| ID |
EntrezGeneID |
GeneSymbol |
GB_ACC |
PROBE_DERIVED_FROM_TRANSCRIPT |
SPOT_ID |
RosettaGeneModelID |
| 100138926_TGI_at |
6566 |
SLC16A1 |
BC026317 |
BC026317 |
|
HSG00206767 |
| 100131045_TGI_at |
|
|
BX098869 |
BX098869 |
|
HSG00284033 |
| 100134882_TGI_at |
3458 |
IFNG |
NM_000619 |
NM_000619 |
|
HSG00277939 |
| 100149534_TGI_at |
51552 |
RAB14 |
AK090889 |
AK090889 |
|
HSG00261054 |
| 100160054_TGI_at |
64848 |
YTHDC2 |
AK131450 |
AK131450 |
|
HSG00236721 |
| 100146505_TGI_at |
|
|
AL133618 |
AL133618 |
|
HSG00313131 |
| 100140938_TGI_at |
|
|
BC033700 |
BC033700 |
|
HSG00259642 |
| 100132399_TGI_at |
8452 |
CUL3 |
NM_003590 |
NM_003590 |
|
HSG00214321 |
| 100152215_TGI_at |
283742 |
FAM98B |
|
non-public |
ENSEMBLE: ENST00000305752 |
HSG00290594 |
| 100147785_TGI_at |
10048 |
RANBP9 |
NM_005493 |
NM_005493 |
|
HSG00243998 |
| 100138290_TGI_at |
9857 |
CEP350 |
|
non-public |
ENSEMBLE: ENST00000357434 |
HSG00201115 |
| 100135090_TGI_at |
613209 |
DEFB135 |
NM_001033017 |
NM_001033017 |
|
HSG00432917 |
| 100123722_TGI_at |
10202 |
DHRS2 |
NM_005794 |
NM_005794 |
|
HSG00288471 |
| 100137544_TGI_at |
2184 |
FAH |
NM_000137 |
NM_000137 |
|
HSG00291601 |
| 100142142_TGI_at |
10663 |
CXCR6 |
NM_006564 |
NM_006564 |
|
HSG00221302 |
| 100129675_TGI_at |
|
|
AK026195 |
AK026195 |
|
HSG00265920 |
| 100144445_TGI_at |
57556 |
SEMA6A |
|
non-public |
ENSEMBLE: ENST00000257414 |
HSG00237491 |
| 100139894_TGI_at |
100132891 |
|
AK123315 |
AK123315 |
|
HSG00256523 |
| 100154397_TGI_at |
|
|
AA043673 |
AA043673 |
|
HSG00254101 |
| 100121886_TGI_at |
54944 |
|
AI341660 |
AI341660 |
|
HSG00314842 |
Total number of rows: 37582
Table truncated, full table size 2222 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL10687_RM-HU01Aa520485_custom_MMPM.cdf.gz |
10.1 Mb |
(ftp)(http) |
CDF |
| GPL10687_probeid_psid_sequence.txt.gz |
4.4 Mb |
(ftp)(http) |
TXT |
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