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Status
Public on Jul 21, 2010
Title
Agilent Salmon Immunity and Quality 44k custom array_SIQ4
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Salmo salar Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SIQ4 (Salmon Immunity and Quality) is fourth version of oligonucleotide platform for Atlantic salmon containing probes to protein encoding transcripts from Unigene, Genbank (complete cds) and Gene Index - DFCI with addition of EST from own leukocyte library. Rainbow trout sequences correspond to genes that have not been identified in salmon.
Contributor(s)
Krasnov A Submission date
Jul 20, 2010
Last update date
Mar 27, 2012
Contact name
Aleksei Krasnov
E-mail(s)
aleksei.krasnov@nofima.no Phone
+47 97602165
Organization name
Nofima AS
Department
Fish Health
Street address
Osloveien 1
City
Aas
ZIP/Postal code
1430
Country
Norway
Samples (110)
GSM664667 , GSM664668 , GSM664669 , GSM664670 , GSM664671 , GSM664672
GSM664673 ,
GSM664674 ,
GSM664675 ,
GSM664676 ,
GSM664677 ,
GSM664678 ,
GSM664679 ,
GSM664680 ,
GSM664681 ,
GSM664682 ,
GSM664683 ,
GSM664684 ,
GSM664685 ,
GSM664686 ,
GSM851497 ,
GSM851498 ,
GSM851499 ,
GSM851500 ,
GSM851501 ,
GSM851502 ,
GSM851503 ,
GSM851504 ,
GSM851505 ,
GSM851506 ,
GSM851507 ,
GSM851508 ,
GSM851509 ,
GSM851510 ,
GSM851511 ,
GSM851512 ,
GSM851513 ,
GSM851514 ,
GSM851515 ,
GSM851516 ,
GSM880708 ,
GSM880709 ,
GSM880710 ,
GSM880711 ,
GSM880712 ,
GSM880713 ,
GSM880714 ,
GSM880715 ,
GSM880716 ,
GSM880717 ,
GSM880718 ,
GSM880719 ,
GSM880720 ,
GSM880721 ,
GSM880722 ,
GSM880723 ,
GSM903228 ,
GSM903229 ,
GSM903230 ,
GSM903231 ,
GSM903232 ,
GSM903233 ,
GSM903234 ,
GSM903235 ,
GSM903236 ,
GSM903237 ,
GSM903238 ,
GSM903239 ,
GSM903240 ,
GSM903241 ,
GSM903242 ,
GSM903243 ,
GSM903244 ,
GSM903245 ,
GSM903246 ,
GSM903247 ,
GSM903248 ,
GSM903249 ,
GSM903250 ,
GSM903251 ,
GSM903252 ,
GSM903253 ,
GSM903254 ,
GSM903255 ,
GSM903256 ,
GSM903257 ,
GSM903258 ,
GSM903259 ,
GSM903260 ,
GSM903261 ,
GSM903262 ,
GSM903263 ,
GSM903264 ,
GSM903265 ,
GSM903266 ,
GSM903267 ,
GSM903268 ,
GSM903269 ,
GSM903270 ,
GSM903271 ,
GSM903272 ,
GSM903273 ,
GSM903274 ,
GSM903275 ,
GSM5554184 ,
GSM5554185 ,
GSM5554186 ,
GSM5554187 ,
GSM5554188 ,
GSM5554189 Series (6)
GSE26984 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in spleen of Atlantic salmon
GSE27013 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in Atlantic salmon
GSE34578 Dietary soyasaponin supplementation to pea protein concentrate reveals nutrigenomic interactions underlying enteropathy in Atlantic salmon
GSE36072 Gene expression in Atlantic salmon skin in response to infection with the parasitic copepod Lepeophtheirus salmonis, cortisol implant, and their combination
GSE36860 Comparison of Atlantic salmon individuals with different outcomes of cardiomyopathy syndrome (CMS)
GSE183265 Gene expression in Atlantic salmon cell culture in response to infectious salmon anaemia virus (ISAV) and polyinosinic-polycytidylic acid - poly(I:C)
Data table header descriptions ID NAME name of transcript
SEQUENCE sequence of probe
GB_ACC GenBank Accession number
SPOT_ID
Data table ID NAME SEQUENCE GB_ACC SPOT_ID 1
GE_BrightCorner
GE_BrightCorner
2
DarkCorner
DarkCorner
3
DarkCorner
DarkCorner
4
DarkCorner
DarkCorner
5
DarkCorner
DarkCorner
6
DarkCorner
DarkCorner
7
DarkCorner
DarkCorner
8
DarkCorner
DarkCorner
9
DarkCorner
DarkCorner
10
DarkCorner
DarkCorner
11
DarkCorner
DarkCorner
12
Ssa#S48420596
AATATGAAGAAGTTTGCCAGTGCCACTCCCACTCAGCAAGATCTGACATTGAAGCTGAAG
GE795164 13
Ssa#S32003150
AATCCACCCAGTAGTAAGCCAAGTGGAAGCCATGCGCAGAGTCGAGGGTTTGCCCCTAAC
DY731747 14
Ssa#DY702000
AAATAAGGTCATCTTGAGCATGTCTGTTACTGTGGACTACAGCCAGCTACCTGGAGGAAA
DY702000 15
Ssa#DY720146
AGGGATACCCAGTCTCTGATCCACAGACTGGAGGGACAGCCCAGTGGTGTTCCATCTCAA
DY720146 16
Ssa#KSS5064
ATTAAAGAACCCAAACCAAGATGTGAGCTCCAGAGACTTGAAGGAGACTGAAGGGAAGGA
CX355429.1 17
Ssa#KSS2395
TTCTTATTAATATATGCACGCGCACCTACTCCTTGGTCCTGTGATGTAGTATCCATGCGC
Ssa#KSS2395
18
Ssa#S18890046
GCTGTAAACTGCAGGTGTTACTGACTCTCCTCTCCAGATCATGTGATTGTCATATTAATG
CB515641 19
Ssa#KSS2263
TGCCCAGCCCTGCATTATTTGTCTCTCCTCTGCCGCTGCTGTACATTTATTAATTAATCA
Ssa#KSS2263
20
Ssa#S31983861
GAAGGAGTGCTTTTTGGTTGATTGGGGCATATAAGTTGTCATTTATTTTGTTGTTAGTTG
Ssa#S31983861
45220 3936 Kbytes .Supplementary data files not provided
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