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Platform GPL10781 Query DataSets for GPL10781
Status Public on Aug 06, 2011
Title Nimblegen T. cruzi 290K version 1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Trypanosoma cruzi
Manufacturer NimbleGen
Manufacture protocol See manufacturer's website
 
Description Trypanosoma cruzi CL-Brener strain
 
Submission date Aug 11, 2010
Last update date Aug 06, 2011
Contact name Todd A Minning
E-mail(s) tminning@uga.edu
Phone 706-542-3155
Fax 706-542-3582
URL http://paige.ctegd.uga.edu/
Organization name University of Georgia
Department CTEGD
Lab Tarleton Research Group
Street address Rm 310 Coverdell
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Samples (16) GSM578346, GSM578347, GSM578348, GSM578349, GSM578350, GSM578351 
Series (1)
GSE23576 Widespread, focal copy number variations (CNV) in Trypanosoma cruzi strains

Data table header descriptions
ID unique identifier
ORF gene ID
Gene Name Gene name
Chromosome Chromosome number
Allele allele (Esm - S, non-Esm - P)
Range start and stop position of feature (gene or UTR/intergenic region)
Density (bp) number of probes/length of feature
Number of Probes number of probes representing the feature

Data table
ID ORF Gene Name Chromosome Allele Range Density (bp) Number of Probes
Tc00.1047053506533.106_3'UTR Tc00.1047053506533.106 3' UTR 1 S 2031:3011 327.33 3
Tc00.1047053506533.70 Tc00.1047053506533.70 hypothetical protein conserved [6988.t00007] 1 S 3012:3752 105.85 7
Tc00.1047053506533.70_3'UTR Tc00.1047053506533.70 3' UTR 1 S 3753:4440 114.83 6
Tc00.1047053506533.34 Tc00.1047053506533.34 phosphatidylinositol kinase domain protein putative [6988.t00008] 1 S 4441:16726 85.91 143
Tc00.1047053410961.10 Tc00.1047053410961.10 phosphatidylinositol kinase domain protein putative [807.t00001] 1 S 16827:17216 78 5
Tc00.1047053410961.10_3'UTR Tc00.1047053410961.10 3' UTR 1 S 17217:19335 88.71 14
Tc00.1047053463297.10 Tc00.1047053463297.10 hypothetical protein [3561.t00001] 1 S 19336:19955 88.57 7
Tc00.1047053421321.9 Tc00.1047053421321.9 tRNA exportin putative [1359.t00001] 1 S 20058:22083 75.03 27
Tc00.1047053411427.10 Tc00.1047053411427.10 hypothetical protein conserved [830.t00001] 1 S 22682:23365 76 9
Tc00.1047053411427.10_3'UTR Tc00.1047053411427.10 3' UTR 1 S 23366:25455 261.37 8
Tc00.1047053411427.30 Tc00.1047053411427.30 hypothetical protein conserved [830.t00003] 1 S 25456:26646 91.61 13
Tc00.1047053411427.30_3'UTR Tc00.1047053411427.30 3' UTR 1 S 26647:27011 122 3
Tc00.1047053411427.40 Tc00.1047053411427.40 hypothetical protein conserved [830.t00004] 1 S 27012:27848 83.7 10
Tc00.1047053411427.40_3'UTR Tc00.1047053411427.40 3' UTR 1 S 27849:28442 99.16 6
Tc00.1047053411427.49 Tc00.1047053411427.49 hypothetical protein conserved [830.t00005] 1 S 28443:29138 116 6
Tc00.1047053448387.9 Tc00.1047053448387.9 hypothetical protein conserved [2758.t00001] 1 S 29240:30888 86.78 19
Tc00.1047053503653.104 Tc00.1047053503653.104 hypothetical protein conserved [4685.t00011] 1 S 33373:33594 74 3
Tc00.1047053503653.104_3'UTR Tc00.1047053503653.104 3' UTR 1 S 33595:33952 119.66 3
Tc00.1047053503653.90 Tc00.1047053503653.90 hypothetical protein conserved [4685.t00009] 1 S 33953:35131 90.69 13
Tc00.1047053503653.90_3'UTR Tc00.1047053503653.90 3' UTR 1 S 35132:35464 111.33 3

Total number of rows: 35010

Table truncated, full table size 3613 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10781_080801_T_cruzi_RT_CGH.ndf.gz 16.2 Mb (ftp)(http) NDF
GPL10781_080801_T_cruzi_RT_CGH.pos.gz 2.0 Mb (ftp)(http) POS

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