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Platform GPL10803 Query DataSets for GPL10803
Status Public on Aug 17, 2010
Title V6.3 BAC-Emulation Oligonucleotide Array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol See manufacturer's web site
The BAC emulated Version 6.3 OLIGO array was comprised of approximately 43,580 oligonucleotides representing 1400 BAC clones, covering ~150 genomic disorders, all 41 subtelomeric regions up to 12 Mb and 43 pericentromeric regions with backbone coverage of every chromosome at the 650-band level of cytogenetic resolution (http://www.bcm.edu/geneticlabs/cma/tables.html). This targeted OLIGO array corresponds to genomic regions covered by the V6 BAC arrays and was manufactured in a 4 x 44K format with an average of 28-30 oligos per region previously covered by a single BAC clone.
 
 
Submission date Aug 13, 2010
Last update date Aug 17, 2010
Contact name zhishuo ou
E-mail(s) zhishuoo@bcm.edu
Phone 7137984365
Organization name Baylor College of medicine
Department Molecular and Human Genetics
Lab Dr Beaudet
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Samples (1) GSM578965
Series (1)
GSE23587 Homologous recombination between nonhomologous chromosomes – Recurrent chromosomal translocations mediated by interchromosomal NAHR

Data table header descriptions
ID
CHR
RANGE_GB
RANGE_START
RANGE_STOP
SEQUENCE

Data table
ID CHR RANGE_GB RANGE_START RANGE_STOP SEQUENCE
A_16_P00000036 1 NC_000001.9 799631 799690 ATTCTTAACTGTTCTGACAGCCATGTGTCTCTAAGCACTTATTCATTTGTGTCTTCACCT
A_16_P15001543 1 NC_000001.9 827249 827308 ATATGAATTTCTTCGGTTAACACAAATTAGGCATGAAATGTAGGCAACCCTGTTTACCAA
A_16_P00000056 1 NC_000001.9 833608 833665 AGTTCTTTGGAAGTTTCCCTGAAAAAGGGAAAAGAGACAAGATATGGTTCAAAGGAAA
A_16_P00000060 1 NC_000001.9 836543 836598 GTGTTCACGGTAAAATTACTCATCCTCAGCCAGTGATAAATGGCATCAGTCTAGAG
A_16_P15001622 1 NC_000001.9 850433 850477 GTCTCTGCGAGGCTCCTGGGCCTTAAGGCCCGAAGGAAGTTTACG
A_16_P00000090 1 NC_000001.9 853295 853344 CACAGACAAGAAGCAGAGAGCAAAGCATTGTGTCTTCTCCTCAAAAGAAG
A_16_P00000099 1 NC_000001.9 857406 857465 GAACTGTCATGAACACTGATGACATTTTATGAGCCTTTTACATGGGACACTACAGAATAC
A_16_P00000104 1 NC_000001.9 860364 860423 TGAATTAGCAAGAAGAGGAGAAATGAGGGAAGAAAAGAGTTAAATGCATGTTGATTCCAA
A_16_P00000112 1 NC_000001.9 865691 865735 CACCTCCGCTTTCGGGTAATTAATTTATAAACAGAGGCGGCGGTG
A_16_P00000127 1 NC_000001.9 875165 875224 CTTCATGAGGCTGAGAACTCATTAGATAAACAGGGTGGAGATCGTGAATTCCTAAATTTA
A_16_P00000140 1 NC_000001.9 884379 884423 GCTGAGAGGAGCAAGAAAAGCCCCCTTGGATACAGACACCCACCG
A_16_P15001775 1 NC_000001.9 894415 894468 CCCCAAATTCTTCTAACAAGTCTTCAGAGGTTGAATAACCCAAGCCATGTTACA
A_16_P00000165 1 NC_000001.9 896991 897035 GTGTGCACTCACGGTAACCTTCAGTCACTGAGGAACAAACACAGG
A_16_P00000173 1 NC_000001.9 899877 899924 CTCTAACCCACTTCAAATTACAAGTCAGGGTCTGAACCCAGTGTGATG
A_16_P00000179 1 NC_000001.9 903494 903546 AGATACATCCATCATGGGACATGTCTGTCCTAAGATACATTTGTGCTGGACAC
A_16_P15001816 1 NC_000001.9 906404 906448 CTCCATCCATGCCCTGAAAGGAAGAGAACAGCATCTCGAGGGGAG
A_16_P00000200 1 NC_000001.9 926279 926335 CAGGTTGCGTAAAACAGGGCTGTGGTTATTTTCGTGTTTGCTGTTTTTATTTCGAAT
A_16_P00000209 1 NC_000001.9 931840 931884 CCACAGGGAATCACAGGCTCGGTGTGACTTTCTCAGAGCGCCATG
A_16_P00000211 1 NC_000001.9 935790 935849 CTATCCTTCTCTTGTTATGTGCTGTGTGTAACAACAACAATTTGGGAACAGCCTAAGTAT
A_16_P15001886 1 NC_000001.9 938324 938382 CTAAACCGAGTGTTGTTATCTCTGGGTAGTTTGGAGTTCTTGTTTCTCAATTAACCATG

Total number of rows: 42600

Table truncated, full table size 4472 Kbytes.




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