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Platform GPL10807 Query DataSets for GPL10807
Status Public on Dec 31, 2010
Title Agilent-026570 Custom BCM-Beaudet Human 180K V8.1 Superfinal aCGH Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description array Comparative Genomic Hybridization (arrayCGH)
180K array with 30kb backbone coverage and exon by exon coverage for 1714 genes reported to be associated with or cause disease
V8.1 Superfinal
Arrays of this design have barcodes that begin with 16026570 or 2526570.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 13, 2010
Last update date Dec 31, 2010
Contact name April Burant Hall
Organization name Baylor College of Medicine
Department Molecular and Human Genetics
Lab Dr. Arthur Beaudet
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Samples (23) GSM584702, GSM584703, GSM584716, GSM584719, GSM584721, GSM584722 
Series (1)
GSE23703 High Frequency of CNV Mutations in Combined Schizophrenia and Epilepsy

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location (hg18)
CYTOBAND Cytoband
RANGE_STRAND +/- strand
RANGE_GB NCBI RefSeq (hg18)
RANGE_START oligo start position on NCBI RefSeq (hg18)
RANGE_END oligo end position on NCBI RefSeq (hg18)
SEQUENCE oligo sequence
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND RANGE_STRAND RANGE_GB RANGE_START RANGE_END SEQUENCE DESCRIPTION
1 532 340 HsCGHBrightCorner pos
2 532 338 DarkCorner2 pos
3 532 336 DarkCorner2 pos
4 532 334 DarkCorner2 pos
5 532 332 DarkCorner2 pos
6 532 330 DarkCorner2 pos
7 532 328 DarkCorner2 pos
8 532 326 DarkCorner2 pos
9 532 324 DarkCorner2 pos
10 532 322 DarkCorner2 pos
11 532 320 DarkCorner2 pos
12 532 318 DarkCorner2 pos
13 532 316 DarkCorner2 pos
14 532 314 DarkCorner2 pos
15 532 312 DarkCorner2 pos
16 532 310 DarkCorner2 pos
17 532 308 DarkCorner2 pos
18 532 306 DarkCorner2 pos
19 532 304 DarkCorner2 pos
20 532 302 DarkCorner2 pos

Total number of rows: 180880

Table truncated, full table size 30880 Kbytes.




Download family Format
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Supplementary data files not provided

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