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Status
Public on Oct 08, 2010
Title
Agilent-029784 ETEC_CGH
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Escherichia coli Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
ETEC CGH Microarray. Oligos designed for conserved regions. Arrays of this design have barcodes that begin with 16029784 or 2529784.. Orientation:. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.. The ID column represents the Agilent Feature Extraction feature number.. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).. To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions..
Submission date
Sep 24, 2010
Last update date
Oct 08, 2010
Contact name
PFGRC JCVI
E-mail(s)
jli@jcvi.org Phone
3017957840
Organization name
J. Craig Venter Institute
Department
PFGRC
Street address
9704 Medical Center Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Samples (216)
GSM627752 , GSM627927 , GSM628414 , GSM628524 , GSM628525 , GSM628526
GSM628538 ,
GSM628539 ,
GSM628540 ,
GSM628541 ,
GSM628542 ,
GSM628543 ,
GSM628544 ,
GSM628545 ,
GSM628546 ,
GSM628547 ,
GSM628548 ,
GSM628549 ,
GSM628550 ,
GSM628551 ,
GSM628552 ,
GSM628553 ,
GSM628554 ,
GSM628555 ,
GSM628556 ,
GSM628557 ,
GSM628558 ,
GSM628559 ,
GSM628560 ,
GSM628561 ,
GSM628562 ,
GSM628563 ,
GSM628564 ,
GSM628565 ,
GSM628566 ,
GSM628567 ,
GSM628568 ,
GSM628569 ,
GSM628588 ,
GSM628589 ,
GSM628590 ,
GSM628591 ,
GSM628618 ,
GSM628619 ,
GSM628656 ,
GSM628677 ,
GSM628678 ,
GSM628679 ,
GSM628680 ,
GSM628681 ,
GSM628682 ,
GSM628683 ,
GSM628684 ,
GSM628685 ,
GSM628686 ,
GSM628687 ,
GSM628688 ,
GSM628689 ,
GSM628690 ,
GSM628700 ,
GSM628706 ,
GSM628707 ,
GSM628708 ,
GSM628709 ,
GSM628710 ,
GSM628711 ,
GSM628712 ,
GSM628713 ,
GSM628714 ,
GSM628715 ,
GSM628716 ,
GSM628717 ,
GSM628718 ,
GSM628719 ,
GSM628720 ,
GSM628721 ,
GSM628722 ,
GSM628723 ,
GSM628724 ,
GSM628725 ,
GSM628727 ,
GSM628728 ,
GSM628729 ,
GSM628730 ,
GSM628731 ,
GSM628732 ,
GSM628733 ,
GSM628734 ,
GSM628735 ,
GSM628736 ,
GSM628737 ,
GSM628738 ,
GSM628739 ,
GSM628740 ,
GSM628741 ,
GSM628742 ,
GSM628743 ,
GSM628744 ,
GSM628745 ,
GSM628746 ,
GSM628747 ,
GSM628748 ,
GSM628749 ,
GSM628750 ,
GSM628751 ,
GSM628752 ,
GSM628753 ,
GSM628754 ,
GSM628755 ,
GSM628756 ,
GSM628757 ,
GSM628758 ,
GSM628759 ,
GSM628760 ,
GSM628761 ,
GSM628762 ,
GSM628763 ,
GSM628764 ,
GSM628765 ,
GSM628766 ,
GSM628767 ,
GSM628768 ,
GSM628769 ,
GSM628770 ,
GSM628771 ,
GSM628772 ,
GSM628773 ,
GSM628774 ,
GSM628775 ,
GSM628776 ,
GSM628777 ,
GSM628778 ,
GSM628779 ,
GSM628780 ,
GSM628781 ,
GSM628782 ,
GSM628783 ,
GSM628784 ,
GSM628785 ,
GSM628786 ,
GSM628787 ,
GSM628918 ,
GSM628940 ,
GSM628941 ,
GSM628942 ,
GSM628983 ,
GSM628984 ,
GSM628985 ,
GSM628986 ,
GSM628987 ,
GSM628988 ,
GSM628989 ,
GSM628990 ,
GSM628991 ,
GSM628992 ,
GSM628993 ,
GSM628994 ,
GSM628995 ,
GSM628996 ,
GSM628997 ,
GSM628998 ,
GSM628999 ,
GSM629000 ,
GSM629001 ,
GSM629002 ,
GSM629003 ,
GSM629004 ,
GSM629005 ,
GSM629006 ,
GSM629007 ,
GSM629008 ,
GSM629009 ,
GSM629010 ,
GSM629011 ,
GSM629012 ,
GSM629013 ,
GSM629015 ,
GSM629017 ,
GSM629019 ,
GSM629022 ,
GSM629028 ,
GSM629041 ,
GSM629042 ,
GSM629043 ,
GSM629044 ,
GSM629045 ,
GSM629046 ,
GSM629047 ,
GSM629048 ,
GSM629049 ,
GSM629050 ,
GSM629051 ,
GSM629052 ,
GSM629053 ,
GSM629157 ,
GSM629158 ,
GSM629159 ,
GSM629160 ,
GSM629161 ,
GSM629165 ,
GSM629173 ,
GSM629174 ,
GSM629175 ,
GSM629180 ,
GSM629181 ,
GSM629182 ,
GSM629183 ,
GSM629184 ,
GSM629185 ,
GSM629186 ,
GSM629187 ,
GSM629188 ,
GSM629236 ,
GSM629237 ,
GSM629238 ,
GSM629276 Series (1)
GSE25601 Novel gene discovery in up to 10 ETEC strains and production of species microarray. Discovery of conserved and unique ETEC genes by comparative genome hybridization studies.
Data table header descriptions ID COL Column
ROW Row
PROBE_ID Spot identifier
CONTROL_TYPE Control type
ORF Name of ORF
SPOT_ID spot identifier
SEQUENCE Oligo sequence
CHROMOSOMAL_LOCATION Chromosome location
Data table ID COL ROW PROBE_ID CONTROL_TYPE ORF SPOT_ID SEQUENCE CHROMOSOMAL_LOCATION 39408
35
65
AM_Fetec_AAT07424.1:pCoo_333
FALSE
AAT07424.1
AAT07424.1
GATGACGGTGAACAGGCCCGTCTGAAAGCGGCCAGGGTGAAGATGCAAAACCTAATCTAA
unmapped
14758
180
65
TS_Fetec_AAT07425.1:pCoo_95
FALSE
AAT07425.1
AAT07425.1
TCGTTATTTTTTATCTGATACGGGACATCTCTGGTATAAGACACACCCTGCTGTTCTGTC
unmapped
15001
178
90
TS_Fetec_AAT07426.1:pCoo_442
FALSE
AAT07426.1
AAT07426.1
TCCGTAAGGACAGACATGAAACAAGAGAGCAATATGCCAATAAAATATGGAGAATTTATC
unmapped
35408
58
76
TS_Fetec_AAT07427.1:pCoo_94
FALSE
AAT07427.1
AAT07427.1
TAGCGCTCGTTGTTCTTTTTGTTATAGTCGTTGTTCTGGGTAGTTTGTATGCGTTGCGTA
unmapped
10830
203
101
TS_Fetec_AAT07428.1:pCoo_994
FALSE
AAT07428.1
AAT07428.1
TTCGTTTAATTATGCTGATATTTCTTGTCATGTCTCTCATGTTACTGGTTTTTGCCATTA
unmapped
25711
115
90
TS_Fetec_AAT07429.1:pCoo_98
FALSE
AAT07429.1
AAT07429.1
ACAAAGTAATCTCCAGGAGCTGCTAAAATTATATCCGGATATCAACCCAAAAGTAGTCTC
unmapped
44508
5
65
TS_Fetec_AAT07430.1:pCoo_86
FALSE
AAT07430.1
AAT07430.1
AGGAGAACTTGAAGCACAACAAAACCGGAATATTCTTTTACAGGCAAAAGTTCAGGGCGC
unmapped
35238
59
76
TS_Fetec_AAT07431.1:pCoo_969
FALSE
AAT07431.1
AAT07431.1
CCACTGCCTTCCCTGCCCCGCAGGGATGAGGCAGTCCCTACCCCCTCAGAACAACTGATG
unmapped
10477
205
127
TS_Fetec_AAT07432.1:pCoo_975
FALSE
AAT07432.1
AAT07432.1
AGAAACGAACAGTTCGGTCTGGACTGGAACCTTGTTTATAAATCGCTACATTCCGCCGGA
unmapped
19040
155
1
AM_Fetec_AAT07433.1:pCoo_45
FALSE
AAT07433.1
AAT07433.1
ACTGGTAGCTACCAGAATCAGAAGATGTCTGAAACCACAAACGCCCAGCAATATGCAAGT
unmapped
5535
234
151
AM_Fetec_AAT07434.1:pCoo_688
FALSE
AAT07434.1
AAT07434.1
CTTCGTCAACCCCCGCCGCCACCCCGACTCCAACCGGCTCCACAGTCAAGTCTATCCCGC
unmapped
25746
115
20
TS_Fetec_AAT07435.1:pCoo_91
FALSE
AAT07435.1
AAT07435.1
TATACACTGACCACATATCACTATCTTATATATTATATTTCTGTATAGTGGTTATTATCT
unmapped
8119
219
83
TS_Fetec_AAT07436.1:pCoo_99
FALSE
AAT07436.1
AAT07436.1
TGGAAGATACCAAAAGATTTCTGGGTTTTCCTGATTATCATGTACGGGGCAATCATCACG
unmapped
7937
220
107
TS_Fetec_AAT07437.1:pCoo_88
FALSE
AAT07437.1
AAT07437.1
TGAACATATGGACGCTAGTAGAGATATTGGGGATGATAGCTCTCCCGCTGTTAGTCCGTC
unmapped
23076
131
89
AM_Fetec_AAT07438.1:pCoo_584
FALSE
AAT07438.1
AAT07438.1
CAGAGAAACCCTCTTTCACACCTTATTTATCGGGCTGCCCAGCCTGCCAGAAGATGTCTG
unmapped
24188
124
76
TS_Fetec_AAT07439.1:pCoo_534
FALSE
AAT07439.1
AAT07439.1
CAGTATTTCCCGGCCTTCGGGCCGGGCTTTTTTTCAATTCAAGAGAATATTCCGGAGTGA
unmapped
4059
243
43
AM_Fetec_AAT07440.1:pCoo_95
FALSE
AAT07440.1
AAT07440.1
TAGTGAACTTATTCGTATATATTCTAAATCAAAAGATACACAATATATAAAAGTGTATAC
unmapped
27131
107
139
AM_Fetec_AAT07443.1:pCoo_863
FALSE
AAT07443.1
AAT07443.1
AGAAAAAATATTTTATCCAGTGAATGGTCAATCATTTACTATCAATGACAGTAGTGTACT
unmapped
18783
156
6
ETEC:EcE24377A_0004:E24377A_197
FALSE
EcE24377A_0004
EcE24377A_0004
AGGGATAATACAAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGCTGAATGCCGGAT
unmapped
12055
196
31
TS_Fetec_EcE24377A_0013_69
FALSE
EcE24377A_0013
EcE24377A_0013
AAAATTTTTTGTGCTTTTGCGCAGAAATTTCGCGATATAGCAGGACAAGACGTGAAACTG
unmapped
45220 5592 Kbytes .Supplementary data files not provided
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