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Platform GPL11041 Query DataSets for GPL11041
Status Public on Oct 12, 2010
Title Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K(Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Gallus gallus (chicken) Genome CGH Microarray 244K

Design ID: 019553

Control Grid: IS-243504-1-V1_244K_CGH_Gga_20080227

Arrays of this design have barcodes that begin with 16019553 or 2519553.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL15501.
 
Submission date Oct 12, 2010
Last update date Feb 06, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (24) GSM1085348, GSM1085349, GSM1085350, GSM1085351, GSM1085352, GSM1085353 
Series (1)
GSE44440 244K array Comparative Genomic Hybridization for the characterization of CNVs among inbred Fayoumi, inbred Leghorn, Line A broiler, and Line B broiler chicken
Relations
Alternative to GPL15501

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END
DESCRIPTION Description
SPOT_ID

Data table
ID COL ROW PROBE_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END DESCRIPTION SPOT_ID
1 267 912 GgaCGHBrightCorner pos --GgaCGHBrightCorner
2 267 910 DarkCorner pos --DarkCorner
3 267 908 DarkCorner pos --DarkCorner
4 267 906 A_94_P12353116 FALSE chr5:30417818-30417877 chr5 NC_006092.2 30417818 30417877
5 267 904 A_94_P13645843 FALSE chr20:4492376-4492435 chr20 NC_006107.2 4492376 4492435
6 267 902 A_94_P13337440 FALSE chr13:11296013-11296072 chr13 NC_006100.2 11296013 11296072
7 267 900 A_94_P13897870 FALSE chrZ:14881360-14881419 chrZ NC_006127.2 14881360 14881419
8 267 898 A_94_P13798600 FALSE chr26:2633403-2633462 chr26 NC_006113.2 2633403 2633462
9 267 896 A_94_P12885566 FALSE chr8:22567126-22567185 chr8 NC_006095.2 22567126 22567185
10 267 894 A_94_P13510768 FALSE chr17:4480857-4480916 chr17 NC_006104.2 4480857 4480916
11 267 892 A_94_P10613325 FALSE chr1:156907612-156907671 chr1 NC_006088.2 156907612 156907671
12 267 890 A_94_P12568584 FALSE chr6:21091468-21091527 chr6 NC_006093.2 21091468 21091527
13 267 888 A_94_P10562898 FALSE chr1:142689981-142690040 chr1 NC_006088.2 142689981 142690040
14 267 886 A_94_P11685595 FALSE chr3:72673240-72673299 chr3 NC_006090.2 72673240 72673299
15 267 884 A_94_P10282259 FALSE chr1:70036135-70036194 chr1 NC_006088.2 70036135 70036194
16 267 882 A_94_P12460750 FALSE chr5:55845169-55845228 chr5 NC_006092.2 55845169 55845228
17 267 880 A_94_P13617019 FALSE chr19:7530685-7530742 chr19 NC_006106.2 7530685 7530742
18 267 878 A_94_P12873532 FALSE chr8:19774867-19774926 chr8 NC_006095.2 19774867 19774926
19 267 876 A_94_P10380702 FALSE BX950409 gb|BX950409|gb|BX935151|gb|CR386810 chr1:96789996-96790055 chr1 NC_006088.2 96789996 96790055 Gallus gallus finished cDNA, clone ChEST114o11.
20 267 874 A_94_P13241115 FALSE chr12:8897661-8897720 chr12 NC_006099.2 8897661 8897720

Total number of rows: 243504

Table truncated, full table size 29001 Kbytes.




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