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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 01, 2011 |
| Title |
Agilent Eichler Human CNP 180K v2.1 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
|
| |
|
| Description |
Custom microarray for assaying copy number polymorphisms (CNPs).
Platform annotations based on human genome UCSC hg18.
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| |
|
| Submission date |
Jan 05, 2011 |
| Last update date |
Jan 17, 2013 |
| Contact name |
Catarina D Campbell |
| E-mail(s) |
cdcamp@u.washington.edu
|
| Organization name |
Univerisity of Washington
|
| Department |
Genome Sciences
|
| Lab |
Evan Eichler
|
| Street address |
3720 15th Avenue NE
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98103 |
| Country |
USA |
| |
|
| Samples (487)
|
GSM648832, GSM648833, GSM648834, GSM648835, GSM648836, GSM648837
GSM648838, GSM648839, GSM648840, GSM648841, GSM648842, GSM648843, GSM648844, GSM648845, GSM648846, GSM648847, GSM648848, GSM648849, GSM648850, GSM648851, GSM648852, GSM648853, GSM648854, GSM648855, GSM648856, GSM648857, GSM648858, GSM648859, GSM648860, GSM648861, GSM648862, GSM648863, GSM648864, GSM648865, GSM648866, GSM648867, GSM648868, GSM648869, GSM648870, GSM648871, GSM648872, GSM648873, GSM648874, GSM648875, GSM648876, GSM648877, GSM648878, GSM648879, GSM648880, GSM648881, GSM648882, GSM648883, GSM648884, GSM648885, GSM648886, GSM648887, GSM648888, GSM648889, GSM648890, GSM648891, GSM648892, GSM648893, GSM648894, GSM648895, GSM648896, GSM648897, GSM648898, GSM648899, GSM648900, GSM648901, GSM648902, GSM648903, GSM648904, GSM648905, GSM648906, GSM648907, GSM648908, GSM648909, GSM648910, GSM648911, GSM648912, GSM648913, GSM648914, GSM648915, GSM648916, GSM648917, GSM648918, GSM648919, GSM648920, GSM648921, GSM648922, GSM648923, GSM648924, GSM648925, GSM648926, GSM648927, GSM648928, GSM648929, GSM648930, GSM648931, GSM648932, GSM648933, GSM648934, GSM648935, GSM648936, GSM648937, GSM648938, GSM648939, GSM648940, GSM648941, GSM648942, GSM648943, GSM648944, GSM648945, GSM648946, GSM648947, GSM648948, GSM648949, GSM648950, GSM648951, GSM648952, GSM648953, GSM648954, GSM648955, GSM648956, GSM648957, GSM648958, GSM648959, GSM648960, GSM648961, GSM648962, GSM648963, GSM648964, GSM648965, GSM648966, GSM648967, GSM648968, GSM648969, GSM648970, GSM648971, GSM648972, GSM648973, GSM648974, GSM648975, GSM648976, GSM648977, GSM648978, GSM648979, GSM648980, GSM648981, GSM648982, GSM648983, GSM648984, GSM648985, GSM648986, GSM648987, GSM648988, GSM648989, GSM648990, GSM648991, GSM648992, GSM648993, GSM648994, GSM648995, GSM648996, GSM648997, GSM648998, GSM648999, GSM649000, GSM649001, GSM649002, GSM649003, GSM649004, GSM649005, GSM649006, GSM649007, GSM649008, GSM649009, GSM649010, GSM649011, GSM649012, GSM649013, GSM649014, GSM649015, GSM649016, GSM649017, GSM649018, GSM649019, GSM649020, GSM649021, GSM649022, GSM649023, GSM649024, GSM649025, GSM649026, GSM649027, GSM649028, GSM649029, GSM649030, GSM649031, GSM649032, GSM649033, GSM649034, GSM649035, GSM649036, GSM649037, GSM649038, GSM649039, GSM649040, GSM649041, GSM649042, GSM649043, GSM649044, GSM649045, GSM649046, GSM649047, GSM649048, GSM649049, GSM649050, GSM649051, GSM649052, GSM649053, GSM649054, GSM649055, GSM649056, GSM649057, GSM649058, GSM649059, GSM649060, GSM649061, GSM649062, GSM649063, GSM649064, GSM649065, GSM649066, GSM649067, GSM649068, GSM649069, GSM649070, GSM649071, GSM649072, GSM649073, GSM649074, GSM649075, GSM649076, GSM649077, GSM649078, GSM649079, GSM649080, GSM649081, GSM649082, GSM649083, GSM649084, GSM649085, GSM649086, GSM649087, GSM649088, GSM649089, GSM649090, GSM649091, GSM649092, GSM649093, GSM649094, GSM649095, GSM649096, GSM649097, GSM649098, GSM649099, GSM649100, GSM649101, GSM649102, GSM649103, GSM649104, GSM649105, GSM649106, GSM649107, GSM649108, GSM649109, GSM649110, GSM649111, GSM649112, GSM649113, GSM649114, GSM649115, GSM649116, GSM649117, GSM649118, GSM649119, GSM649120, GSM649121, GSM649122, GSM649123, GSM649124, GSM649125, GSM649126, GSM649127, GSM649128, GSM649129, GSM649130, GSM649131, GSM649132, GSM649133, GSM649134, GSM649135, GSM649136, GSM649137, GSM649138, GSM649139, GSM649140, GSM649141, GSM649142, GSM649143, GSM649144, GSM649145, GSM649146, GSM649147, GSM649148, GSM649149, GSM649150, GSM649151, GSM649152, GSM649153, GSM649154, GSM649155, GSM649156, GSM649157, GSM649158, GSM649159, GSM649160, GSM649161, GSM649162, GSM649163, GSM649164, GSM649165, GSM649166, GSM649167, GSM649168, GSM649169, GSM649170, GSM649171, GSM649172, GSM649173, GSM649174, GSM649175, GSM649176, GSM649177, GSM649178, GSM649179, GSM649180, GSM649181, GSM649182, GSM649183, GSM649184, GSM649185, GSM649186, GSM649187, GSM649188, GSM649189, GSM649190, GSM649191, GSM649192, GSM649193, GSM649194, GSM649195, GSM649196, GSM649197, GSM649198, GSM649199, GSM649200, GSM649201, GSM649202, GSM649203, GSM649204, GSM649205, GSM649206, GSM649207, GSM649208, GSM649209, GSM649210, GSM649211, GSM649212, GSM649213, GSM649214, GSM649215, GSM649216, GSM649217, GSM649218, GSM649219, GSM649220, GSM649221, GSM649222, GSM649223, GSM649224, GSM649225, GSM649226, GSM649227, GSM649228, GSM649229, GSM649230, GSM649231, GSM649232, GSM649233, GSM649234, GSM649235, GSM649236, GSM649237, GSM649238, GSM649239, GSM649240, GSM649241, GSM649242, GSM649243, GSM649244, GSM649245, GSM649246, GSM649247, GSM649248, GSM649249, GSM649250, GSM649251, GSM649252, GSM649253, GSM649254, GSM649255, GSM649256, GSM649257, GSM649258, GSM649259, GSM649260, GSM649261, GSM649262, GSM649263, GSM649264, GSM649265, GSM649266, GSM649267, GSM649268, GSM649269, GSM649270, GSM649271, GSM649272, GSM649273, GSM649274, GSM649275, GSM649276, GSM649277, GSM649278, GSM649279, GSM649280, GSM649281, GSM649282, GSM649283, GSM649284, GSM649285, GSM649286, GSM649287, GSM649288, GSM649289, GSM649290, GSM649291, GSM649292, GSM649293, GSM649294, GSM649295, GSM649296, GSM649297, GSM649298, GSM649299, GSM649300, GSM649301, GSM649302, GSM649303, GSM649304, GSM649305, GSM649306, GSM649307, GSM649308, GSM649309, GSM649310, GSM649311, GSM649312, GSM649313, GSM649314, GSM649315, GSM649316, GSM649317, GSM649318
|
| Series (1) |
| GSE26450 |
Population genetic properties of differentiated human copy number polymorphisms |
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| Data table header descriptions |
| ID |
Agilent feature number |
| COL |
|
| ROW |
Row on microarray |
| PROBE_NAME |
Probe Name |
| SEQUENCE |
|
| CONTROL_TYPE |
Control type |
| GB_ACC |
GenBank Accession number |
| GENE_SYMBOL |
Gene Symbol |
| GENE_NAME |
Gene Name |
| ACCESSION_STRING |
Accession String |
| CHROMOSOMAL_LOCATION |
Chromosomal Location |
| CHROMOSOME |
|
| RANGE_GB |
CHROMOSOME acession.version |
| RANGE_START |
start position relative to RANGE_GB |
| RANGE_END |
end position relative to RANGE_GB |
| CYTOBAND |
Cytoband |
| DESCRIPTION |
Description |
| SPOT_ID |
|
| Data table |
| ID |
COL |
ROW |
PROBE_NAME |
SEQUENCE |
CONTROL_TYPE |
GB_ACC |
GENE_SYMBOL |
GENE_NAME |
ACCESSION_STRING |
CHROMOSOMAL_LOCATION |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
CYTOBAND |
DESCRIPTION |
SPOT_ID |
| 1 |
532 |
340 |
HsCGHBrightCorner |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 2 |
532 |
338 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 3 |
532 |
336 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 4 |
532 |
334 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 5 |
532 |
332 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 6 |
532 |
330 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 7 |
532 |
328 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 8 |
532 |
326 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 9 |
532 |
324 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 10 |
532 |
322 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 11 |
532 |
320 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 12 |
532 |
318 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 13 |
532 |
316 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 14 |
532 |
314 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 15 |
532 |
312 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 16 |
532 |
310 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 17 |
532 |
308 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 18 |
532 |
306 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 19 |
532 |
304 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
| 20 |
532 |
302 |
DarkCorner2 |
|
pos |
|
|
|
|
|
|
|
|
|
|
|
CONTROL |
Total number of rows: 180880
Table truncated, full table size 38668 Kbytes.
| Supplementary data files not provided |
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