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Platform GPL11411 Query DataSets for GPL11411
Status Public on Jan 13, 2011
Title JCVI PFGRC Actinobacillus actinomycetemcomitans 12K v2 array designed primarily based on strain HK1651
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Aggregatibacter actinomycetemcomitans
Manufacturer JCVI PFGRC
Manufacture protocol 2QAA, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 7392081, pen id 10179, pen cycles -1, operator Susie, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 2303 oligonucleotides, has 12288 spots distributed in 96 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jan 10, 2011
Last update date Jan 13, 2011
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain HK1651 Target map of strain HK1651
ORF
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain HK1651 ORF SPOT_ID
2QAA00001_A_1 TTCCTTTTGAATTGCTCATTTCGTGCTTCTTTTATTTGCTTTTAGTTGGTGAGATAAGTAAGATCGCTCC 35.71 31 59 HK1651 AA02019 hypothetical protein AA02019 AA02019::70::100.0::1.3E-11::+ AA02019
2QAA00001_A_10 CGATGGCGATCGCAAAAACTCCAAAAAAACAATCGCACTTTGATCAAGAAAACCAAAGTGCGGTCTTATT 40.0 31 109 HK1651 AA01853 hypothetical protein AA01853 AA01853::70::100.0::1.1E-11::+ AA01853
2QAA00001_A_11 AAGGGGGAAAACAAAAAGTGCGGTGATTTTTTTCACTGTTTTTCAGCGCTTGAAAACACCGCTAAAAACC 40.0 32 118 HK1651 AA00173 hypothetical protein AA00173 AA00173::70::100.0::1.3E-11::+ AA00173
2QAA00001_A_12 AGAAACGAGAGAGCGAGTTTGTAAATAATTTTTTCGGGCGTTTTTTATCGGTATCCTTTTCTACTCACGA 37.14 31 111 HK1651 AA02167 hypothetical protein AA02167 AA02167::70::100.0::1.1E-11::+ AA02167
2QAA00001_A_13 TCTCTCTCCCGAAAGCGGGCGAGAGGAAAATAAAAAACATTTTAAAATACAACCGCACTTTAACTCTAAC 38.57 31 78 HK1651 AA00199 hypothetical protein AA00199 AA00199::70::100.0::1.3E-11::+ AA00199
2QAA00001_A_14 TTTATGCTTATTTTTTAGGCGTGAATTCTTGGTTTTTGATTATTATGGTTTCACTCAAATTAAAGGCGGC 31.43 33 82 HK1651 AA02750 hypothetical protein AA02750 AA02750::70::100.0::1.1E-11::+ AA02750
2QAA00001_A_15 TGTGAAATCGGTTAAAAAATATATCACAGAAACAAAAAAGGCGATCAACAAAAATCTGCTTTTTGTGACC 31.43 31 82 HK1651 AA00217 hypothetical protein AA00217 AA00217::70::100.0::1.3E-11::+ AA00217
2QAA00001_A_16 AGAGCAGTTTGGGATTTGGAGCGATTTAAAAGGAGGCAAAAATATGTTAAAAAACATTGAAAAAGCCACC 29.69 29 122 Obsolete Obsolete Obsolete AA02770::70::91.42857::8.5E-10::+ --Obsolete
2QAA00001_A_17 TTATTACGATGGAGCGCGTTTCCCGACGCGTGCCTTCATTTTCTTATTTTTTATCAGCGCGCGTCAGAAG 47.14 30 84 HK1651 AA00738 hypothetical protein AA00738 AA00738::70::100.0::1.3E-11::+ AA00738
2QAA00001_A_18 CGCCAGTCTACTGCTTTCAGGGAAAATTTCAATAAGCAAAGCACAGAAAGTGCGGTCGGTTTTGAATGTG 44.29 30 90 HK1651 AA00267 hypothetical protein AA00267 AA00267::70::100.0::1.0E-11::+ AA00267
2QAA00001_A_19 TATCATGATGGCTGTTGCACTTATCATCATTTGGGGCGGGTTATTAGTGTCTGTTATCAGATTACCGAAA 40.0 29 74 HK1651 AA00883 hypothetical protein AA00883 AA00883::70::100.0::1.3E-11::+ AA00883
2QAA00001_A_2 TTTTTGAGCGGAGCATTATTTTTTATTCACAAAGTACGCCCAAAAAACAGCTGTTTATTCAGGTTGTTTC 34.29 31 96 HK1651 AA02621 hypothetical protein AA02621 AA02621::70::100.0::1.1E-11::+ AA02621
2QAA00001_A_20 TGGTTTTTGGTCATGGCGACAATCAGGCTTAAACGCATTGTATTTCCTAATGTATTTAACGGGTTAAAGT 37.14 29 87 HK1651 AA00291 hypothetical protein AA00291 AA00291::70::100.0::1.0E-11::+ AA00291
2QAA00001_A_21 AATTAAACAGGTTTTACAAACCAATTATCCAAACCGGATATTGCATCCCGCGAAGAATTTGATTTACAAA 32.86 31 94 HK1651 AA01251 hypothetical protein AA01251 AA01251::70::100.0::1.3E-11::+ AA01251
2QAA00001_A_22 AACCCAATTATTATTTGTCTTTTTAGCCTCCTTATGTCTAAATAACGACATTTTCCCGTCTTTAGAATCA 31.43 29 80 HK1651 AA00428 hypothetical protein AA00428 AA00428::70::100.0::1.0E-11::+ AA00428
2QAA00001_A_23 GTTTTTTCACGAGATAACGTTATGTGGCAAAATTTTATTCAACACGCAAACCGATTTGGCAAAACAAAAA 32.86 32 107 HK1651 AA01610 hypothetical protein AA01610 AA01610::70::100.0::1.3E-11::+ AA01610
2QAA00001_A_24 AAGAAATTATGTCGTAACTGTAAGATTGTTAAACGCGAAGGTGTTGTTCGTGTACTTTGTAGCGATCCTA 37.14 31 77 HK1651 AA01238 50S ribosomal protein L36, putative AA01238 AA01238::70::100.0::1.0E-11::+ AA01238
2QAA00001_A_3 GGATTTTAACCGCACTTTTTCTTACGTAAAACGCTTTATACCAGCTGTAGCTGCACCATTCGTCCTGTTT 41.43 30 73 HK1651 AA00122 hypothetical protein AA00122 AA00122::70::100.0::1.3E-11::+,AA00123::70::100.0::1.3E-11::- AA00122
2QAA00001_A_4 TGTATAAAAACCGGGTATAAGCCCGGTTTTTTGTTGGTATCAATTCGCCTAATTAGTAGAAAAATGATAA 32.86 31 105 HK1651 AA02828 hypothetical protein AA02828 AA02828::70::100.0::1.1E-11::+ AA02828
2QAA00001_A_5 TGTTGCTAAAACAGGACGAATGGTGCAGCTACAGCTGGTATAAAGCGTTTTACGTAAGAAAAAGTGCGGT 42.86 32 79 HK1651 AA00123 hypothetical protein AA00123 AA00123::70::100.0::1.3E-11::+,AA00122::62::100.0::8.2E-10::- AA00123

Total number of rows: 2803

Table truncated, full table size 503 Kbytes.




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