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Status
Public on Jul 01, 2011
Title
SALSIFY, Agilent-026881 S. Typhimurim
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Manufacturer
Agilent Technologies
Manufacture protocol
SurePrint
Description
Probes for ORFs from S. Typhimurim str. SL1344, LT2, 14028S. Design was aimed to have one probe for ORFs shorter than 200 bp and 2 probes for longer ones.
Contributor(s)
Hinton JC , Hokamp K , Vogel J , Mollenkopf H Submission date
Jan 11, 2011
Last update date
Jul 01, 2011
Contact name
Hans-Joachim Mollenkopf
E-mail(s)
mollenkopf@mpiib-berlin.mpg.de Phone
+49 30 28460 482
Organization name
Max-Planck-Institute for Infection Biology
Lab
Microarray/Genomics Core Facility
Street address
Charitéplatz 1
City
Berlin
ZIP/Postal code
10117
Country
Germany
Samples (34)
GSM652760 , GSM653258 , GSM653259 , GSM653260 , GSM653261 , GSM653262
GSM653263 ,
GSM653264 ,
GSM944527 ,
GSM944531 ,
GSM944532 ,
GSM944533 ,
GSM944534 ,
GSM944559 ,
GSM1173066 ,
GSM1173067 ,
GSM1173068 ,
GSM1173069 ,
GSM1439505 ,
GSM1439506 ,
GSM1439507 ,
GSM1439508 ,
GSM1439509 ,
GSM1439510 ,
GSM1439511 ,
GSM1439512 ,
GSM1439513 ,
GSM1439514 ,
GSM1439515 ,
GSM1439516 ,
GSM2552929 ,
GSM2552930 ,
GSM2552931 ,
GSM2552932 Series (5)
GSE26573 Global post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB RNA
GSE38523 Targets of the small regulatory RNA DapZ
GSE48221 A small RNA activates CFA synthase by a reprogrammable mechanism of mRNA stabilization
GSE59566 Transcriptomic comparison of chlorhexidine tolerant and sensitive Salmonella Typhimurium
GSE97161 Salmonella enterica serovar Typhimurium gene expression in exponential and stationary phase cultures
Data table header descriptions ID Row Col chr_coord accessions SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName Description SPOT_ID
Data table ID Row Col chr_coord accessions SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName Description SPOT_ID 1
1
1
260
BrightCorner
0
0
1
GE_BrightCorner
GE_BrightCorner
GE_BrightCorner
--GE_BrightCorner
2
1
2
66
Structural
0
1
1
DarkCorner
DarkCorner
DarkCorner
--DarkCorner
3
1
3
66
Structural
0
1
1
DarkCorner
DarkCorner
DarkCorner
--DarkCorner
4
1
4
chr1:4196869-4196928
SL1344|SL3922|SL1344|SL3922|LT2|STM3968|14028S|STM14_4774|protein_id|NP_462853.1
0
0
CGTAACCGCCTCTTCCGACACTTTCTATCCGGGTCAGGAACGTTACGACACCTATTCTGG
3
0
HSL3922STM3968ATC4,1
udp
SL3922
uridine phosphorylase
5
1
5
chr1:2100505-2100554
SL1344|SL1998|SL1344|SL1998|LT2|STM2022|14028S|STM14_2510|protein_id|NP_460967.1
0
0
GCAGTATAAACCCTGGTTTCAGCCGTTATATGAACCTGCCAGCGGTGAAA
5
0
HSL1998STM2022ATC2,2
cbiN
SL1998
cobalt transport protein CbiN
6
1
6
chr3:71370-71429
SL1344|SLP2_0085|SL1344|SLP2_0085
0
0
GATTTTATATGTCCGATGGATCATGGGTTCGAAGTGTAAACAACAAGGGCATCTATACCG
7
0
x_SLP2_0085,1
SLP2_0085
SLP2_0085
Unknown
7
1
7
unmapped
0
0
ATATTTGCGATATCGTGCCAGAGACGCAGCTTCCTGTCAGCGGGGACAATATCCATGATA
9
0
ctrl_SL0764
ctrl_SL0764
ctrl_SL0764
Unknown
8
1
8
chr1:578749-578808
SL1344|SL0511|SL1344|SL0511|LT2|STM0518|14028S|STM14_0608|protein_id|NP_459513.1
0
0
TGTTACGTTTCTCTGCCAATCTTTCTATGCTGTTTACGGAATATGATTTCCTGGAACGCT
11
0
HSL0511STM0518ATC0,1
gip
SL0511
hydroxypyruvate isomerase
9
1
9
chr1:3434753-3434798
SL1344|SL3218|SL1344|SL3218
0
0
TGCTTATCAGGCCGGTGAAGGGTATAGAGGTTGCAGAAGACGCCAG
13
0
HSL3218,2
SL3218
SL3218
Unknown
10
1
10
chr1:1644444-1644503
SL1344|SL1528|SL1344|SL1528|LT2|STM1597|14028S|STM14_1934|protein_id|NP_460556.2
0
0
GAGGGCAAACTGTTGGCGATGTATTGACCGGCCATGAAAAAGTACGCATGGTCTCTTTAA
15
0
HSL1528STM1597ATC1,2
ydcW
SL1528
gamma-aminobutyraldehyde dehydrogenase
11
1
11
chr1:1286447-1286493
SL1344|SL1180|SL1344|SL1180|LT2|STM1241|14028S|STM14_1492|protein_id|NP_460211.1
0
0
TCCTCAATGAACTCACAAAACGCGTACATCAACTTTTTCCCGATGCG
17
0
x_SL1180STM1241ATC,1
msgA
SL1180
macrophage survival protein
12
1
12
chr2:34543-34602
LT2|PSLT043|LT2|PSLT043|14028S|STM14_5566|protein_id|NP_490533.1
0
0
GTCCGACGATGGAGGAAATTGGCTATCGTACCGATATTTTTACACTGGACGGGATCACCG
19
0
x_PSLT043ATC5566,1
PSLT043
PSLT043
type II secretion system protein
13
1
13
chr1:466121-466165
SL1344|SL0406|SL1344|SL0406|LT2|STM0411|14028S|STM14_0486|protein_id|NP_459406.1
0
0
GTGTGCGGACGTTGTTCCCGTGAGTTTGTGTATTCAAATCTGCGT
21
0
HSL0406STM0411ATC0,2
yajD
SL0406
hypothetical protein
14
1
14
chr1:489979-490025
LT2|STM0436A|LT2|STM0436A|14028S|STM14_0516
0
0
GTTCGCTGACAGTCTGGCTTGACGAGTTCTGCTATTGCAACATGGAG
23
0
HSTM0436AATC0516,1
STM0436A
STM0436A
Unknown
15
1
15
chr1:4866248-4866307
SL1344|SL4516|SL1344|SL4516|LT2|STM4589|14028S|STM14_5510|protein_id|NP_463445.1
0
0
CTGGAAGGCAAGAATGAGATTGAGCAGTATGTGTATGCGTTGACTCATGAGCTGAAAAGT
25
0
HSL4516STM4589ATC5,1
creC
SL4516
sensory histidine kinase CreC
16
1
16
chr1:298314-298373
SL1344|SL0253|SL1344|SL0253|LT2|STM0258|14028S|STM14_0303|protein_id|NP_459256.1
0
0
GAACCGCTAAGCAATGAAGAGCGGATCCGTATCCTCGTGTGGAATATATTCAAGCAGCAG
27
0
HSL0253STM0258ATC0,2
yafD
SL0253
hypothetical protein
17
1
17
chr1:1721598-1721657
SL1344|SL1601|SL1344|SL1601|LT2|STM1671|14028S|STM14_2018|protein_id|NP_460629.1
0
0
CTCCCTACTGGCTTGACTGTGATGAGCATTATCAGTTCGAAATTTGTCAGCTTACGTCAA
29
0
HSL1601STM1671ATC2,1
SL1601
SL1601
putative regulatory protein
18
1
18
chr1:338988-339032
SL1344|isrA|SL1344|isrA|14028S|STM14_0346|SEN|SEN0274
0
0
ATGACCGCCTGTTACTCACAAATCCCCAGCCAGCACCTTAAGGGT
31
0
HisrAATC0346SEN027,2
isrA
isrA
Unknown
19
1
19
chr1:4545856-4545915
SL1344|SL4220|SL1344|SL4220|LT2|STM4284|14028S|STM14_5153|protein_id|NP_463149.1
0
0
TGGGCGGGAATGATGTTTTTAAACGGTGAACCGGGCTTTATTGAAAAGAATAAGCAGAAG
33
0
HSL4220STM4284ATC5,2
yjcO
SL4220
TPR repeat-containing protein
20
1
20
unmapped
0
0
TGATTCAGCGCTATAAACGTTTTTTAGCCGATGTGATCACCCCTGACGGTACGACGCTTA
35
0
ctrl_SL0188
ctrl_SL0188
ctrl_SL0188
Unknown
15738 3503 Kbytes .Supplementary data files not provided
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