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Status
Public on Jan 15, 2011
Title
Streptococcus pneumoniae D39 Multiplatform 1909k array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Streptococcus pneumoniae D39 Manufacturer
university of Groningen
Manufacture protocol
Standard spotting protocol on GenpakArray21
Support
glass
Coating
aminosilane
Description
mixed spotted oligonucleotide/cDNA
Contributor(s)
de Jong A , Holsappel S Submission date
Jan 14, 2011
Last update date
Jan 15, 2011
Contact name
Anne de Jong
E-mail(s)
anne.de.jong@rug.nl Phone
+31 50 363 2047
Organization name
university of Groningen
Department
Molecular Genetics
Street address
Nijenborgh 7
City
Groningen
ZIP/Postal code
9747 AG
Country
Netherlands
Samples (155)
GSM659167 , GSM659168 , GSM659169 , GSM660483 , GSM723284 , GSM723285
GSM723286 ,
GSM723287 ,
GSM723288 ,
GSM723289 ,
GSM757638 ,
GSM757639 ,
GSM757640 ,
GSM757641 ,
GSM757642 ,
GSM757643 ,
GSM757644 ,
GSM757645 ,
GSM766138 ,
GSM766139 ,
GSM766140 ,
GSM789257 ,
GSM789258 ,
GSM789259 ,
GSM789260 ,
GSM789261 ,
GSM789262 ,
GSM789263 ,
GSM789264 ,
GSM789265 ,
GSM789266 ,
GSM789267 ,
GSM818720 ,
GSM818721 ,
GSM818722 ,
GSM818723 ,
GSM818724 ,
GSM818725 ,
GSM818726 ,
GSM818727 ,
GSM818728 ,
GSM818729 ,
GSM1017567 ,
GSM1017568 ,
GSM1017569 ,
GSM1060717 ,
GSM1060718 ,
GSM1060719 ,
GSM1060720 ,
GSM1060721 ,
GSM1060722 ,
GSM1060723 ,
GSM1060724 ,
GSM1060725 ,
GSM1121603 ,
GSM1121604 ,
GSM1121605 ,
GSM1121606 ,
GSM1121607 ,
GSM1121608 ,
GSM1121609 ,
GSM1121610 ,
GSM1121611 ,
GSM1121612 ,
GSM1121613 ,
GSM1121614 ,
GSM1386903 ,
GSM1386904 ,
GSM1402810 ,
GSM1402811 ,
GSM1402812 ,
GSM1402813 ,
GSM1402814 ,
GSM1402815 ,
GSM1402816 ,
GSM1402817 ,
GSM1402818 ,
GSM1410676 ,
GSM1410677 ,
GSM1410702 ,
GSM1410704 ,
GSM1509871 ,
GSM1509872 ,
GSM1564403 ,
GSM1564404 ,
GSM1564405 ,
GSM1564406 ,
GSM1588264 ,
GSM1588265 ,
GSM1588266 ,
GSM1588267 ,
GSM1588268 ,
GSM1588269 ,
GSM1599970 ,
GSM1599971 ,
GSM1599972 ,
GSM1599973 ,
GSM1599974 ,
GSM1599975 ,
GSM1599976 ,
GSM1602760 ,
GSM1602761 ,
GSM1624636 ,
GSM1624637 ,
GSM1624987 ,
GSM1624988 ,
GSM1624989 ,
GSM1624990 ,
GSM1624991 ,
GSM1624992 ,
GSM1653208 ,
GSM1653209 ,
GSM1815511 ,
GSM1815512 ,
GSM1815513 ,
GSM1815514 ,
GSM1815515 ,
GSM1815516 ,
GSM1815517 ,
GSM1815518 ,
GSM1815519 ,
GSM1815520 ,
GSM1815521 ,
GSM1815522 ,
GSM1815523 ,
GSM1815524 ,
GSM1903947 ,
GSM1903948 ,
GSM1903949 ,
GSM1904484 ,
GSM1904485 ,
GSM1904486 ,
GSM1904487 ,
GSM1921847 ,
GSM1921848 ,
GSM1921849 ,
GSM1921850 ,
GSM2290636 ,
GSM2290637 ,
GSM2345225 ,
GSM2345226 ,
GSM2384974 ,
GSM2384975 ,
GSM2477254 ,
GSM2477255 ,
GSM2932551 ,
GSM2932553 ,
GSM2932647 ,
GSM2932648 ,
GSM2932649 ,
GSM2932650 ,
GSM2932651 ,
GSM2932652 ,
GSM3898204 ,
GSM3898205 Series (77)
GSE26154 cps wild type vs cps mgtA mutant
GSE26839 Chromosome segregation in Streptococcus pneumoniae
GSE29234 Impact of adcR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Zinc
GSE29235 Transcriptional response of Streptococcus pneumoniae D39 to Zinc
GSE29236 Transcriptional response of Streptococcus pneumoniae to Zn2+-limitation and the repressor/activator function of AdcR
GSE30413 Transcriptional response of Streptococcus pneumoniae to copper
GSE30414 Impact of copY delation on the transcriptome of Streptococcus pneumoniae D39
GSE30415 The cop operon is required for copper homeostasis and contributes to virulence in Streptococcus pneumoniae
GSE30891 Impact of celR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Cellobiose
GSE31815 ccpA mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + Glucose at MID-log growth phase
GSE31816 ccpA mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + GLucose at transition-phase of growth (TS)
GSE31817 ccpA mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + Galactose at MID-log growth phase
GSE31818 ccpA mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + galactose at transition-phase of growth (TS)
GSE31819 CcpA Ensures Optimal Metabolic Fitness of Streptococcus pneumoniae
GSE33033 ahrC mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + 10 mM arginine
GSE33034 argR1 mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + 10 mM arginine
GSE33035 argR1-ahrC mutant compared to D39 wild-type in Streptococcus pneumoniae in CDM + 10 mM arginine
GSE33036 Streptococcus pneumoniae D39 wild-type grown in CDM+10 mM arginine compared to D39 wild type grown in CDM + 0.05 mM arginine
GSE33043 ArgR1 and AhrC Mediate Arginine-Dependent Regulation of Arginine Acquisition- and Virulence Genes in the Human Pathogen Streptococcus pneumoniae
GSE41448 Impact of rokA delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE43342 Impact of bguR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE43343 Transcriptional response of Streptococcus pneumoniae D39 to Cellobiose at time point T1
GSE43344 Transcriptional response of Streptococcus pneumoniae D39 to Cellobiose at time point T2
GSE43345 Cellobiose-mediated gene expression in Streptococcus pneumoniae and the repressor function of the novel GntR-type regulator BguR
GSE46002 The response of Streptococcus pneumoniae to replication stress on the transcriptome of a wild-type strain
GSE57696 Low Co vs high Co in CDM
GSE58180 Transcriptional response of Streptococcus pneumoniae D39 to Galactose
GSE58181 Transcriptional response of Streptococcus pneumoniae D39 to Lactose
GSE58182 Impact of lacT delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Lactose
GSE58183 Impact of lacR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE58184 The role of the transcription factors LacR and LacT in the regulation of the lactose and galactose utilization pathways in Streptococcus pneumoniae
GSE58424 BSA Vs RSV G Protein
GSE58425 RSV vs BSA
GSE58427 RSV increases the virulence of Streptococcus pneumoniae by binding to PBP1a: a new paradigm respiratory infection
GSE61649 Impact of ulaR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of ascorbic acid
GSE64105 Transcriptional response of Streptococcus pneumoniae D39 to ascorbic acid
GSE64106 Impact of ulaR2 delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of ascorbic acid
GSE64107 Ascorbic acid-dependent gene expression in Streptococcus pneumoniae and the activator function of the transcriptional regulator UlaR2.
GSE65155 Transcriptome comparison of the Streptococcus pneumoniae D39 wild-type treated with 1mM to with 0mM H2O2
GSE65156 Transcriptome comparison of the Streptococcus pneumoniae D39∆tpxD treated with 1mM to 0mM H2O2
GSE65157 TpxD is a global sensor and transcriptional regulator for pneumococcal response to H2O2, and is regulated by CodY
GSE65547 Impact of ccpA delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Maltose
GSE65548 Impact of malR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE65549 Transcriptional response of Streptococcus pneumoniae D39 to Maltose
GSE65550 Maltose-dependent transcriptional regulation of the mal regulon by MalR in Streptococcus pneumoniae
GSE65673 Fucose-mediated transcriptional activation of the fcs operon by FcsR in Streptococcus pneumoniae
GSE66535 Impact of nanR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of sialic acid
GSE66558 Impact of ccpA delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE66559 Impact of ccpA delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of sialic acid
GSE66560 Transcriptional response of Streptococcus pneumoniae D39 to sialic acid
GSE66561 Sialic acid-mediated gene expression in Streptococcus pneumoniae and the role of NanR as a transcriptional activator of the nan gene cluster
GSE67668 Impact of plfB delation on the transcriptome of Streptococcus pneumoniae D39
GSE70638 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with galactose to cells grown with the same sugar after a 1 hr pulse with glucose
GSE70639 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with galactose to cells grown with glucose as carbon source
GSE70640 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with N-acetyl glucosamine to cells grown with glucose as carbon source
GSE70641 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with mannose to cells grown with glucose as carbon source
GSE70642 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with N-acetylglucosamine to cells grown with the same sugar after a 1 hr pulse with glucose
GSE70643 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with mannose to cells grown with the same sugar after a 1 hr pulse with glucose
GSE70644 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 grown with a mix of sugars (mannose, N-acetylglucosamine, galactose) to cells grown with the same mix after a 1 hr pulse with glucose
GSE70648 Transcriptional and metabolic effects of glucose on S. pneumoniae sugar metabolism
GSE73818 Ni2+-dependent and PsaR-mediated regulation of the virulence genes pcpA, psaBCA, and prtA in Streptococcus pneumoniae
GSE73850 Transcriptome response of the Streptococcus pneumoniae D39 wild-type to Ni2+
GSE73851 Impact of adcR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Ni2+
GSE73852 The regulation of the AdcR regulon in Streptococcus pneumoniae depends both on Zn2+- and Ni2+- availability
GSE74500 Impact of galR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Glucose
GSE74501 Impact of galR delation on the transcriptome of Streptococcus pneumoniae D39 in the presence of Galactose
GSE74502 GalR Acts as a Transcriptional Activator of galKT in the Presence of Galactose in Streptococcus pneumoniae
GSE86008 N-acetylgalactosamine Mediated Regulation of the aga Operon by AgaR in Streptococcus pneumoniae
GSE88766 Methionine-mediated gene expression and characterization of the CmhR regulon in Streptococcus pneumoniae
GSE89589 Transcriptome response of the Streptococcus pneumoniae D39 wild-type to N-acetyleglucosamine (NAG)
GSE94514 Transcriptome response of the Streptococcus pneumoniae D39 wild-type to Aspirin
GSE109124 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 versus D39PcpsT=>C in medium without uracil
GSE109126 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 versus D39PcpsT=>C in medium with uracil
GSE109127 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 versus D39SM in medium with uracil
GSE109128 Comparing transcriptome by means of DNA microarrays of Streptococcus pneumoniae D39 versus D39SM in medium without uracil
GSE109129 Interplay between capsule expression and uracil metabolism in Streptococcus pneumoniae
GSE133010 D39 wild-type vs D39 ΔplcR in GM17 medium
Data table header descriptions ID ORF Locus tag
probe_id Reference for the original probe design
evalue x homology value with TIGR4
gene gene name
protein_id protein name
gene_id GI number
SEQUENCE probe sequence
Data table ID ORF probe_id evalue gene protein_id gene_id SEQUENCE SPD_0001
SPD_0001 SP0001;F2573
0.0E+00
dnaA
YP_815417.1
GeneID:4442762
tgaactcatcaaggtagaggaaaatgttgccactatatttctacctcgctctgaaatggaaatggtctgggaaaaacaactaaaagatattattgtagtagctggttttgaaatttatgacgctgaaataactccccactatattttcaccaaacctcaagatacgactagctcacaagttgaagaagctacaaatttaactctttataactatagtccaaagttagtatctattccttattcagatacgggatt
SPD_0002
SPD_0002 SP0002;F2574
0.0E+00
dnaN
YP_815419.1
GeneID:4442015
aaattgacgtgaccaatgaaggtattactttaattggttcaaatggtcaaatttcaattgaaaattttatttctcaaaaaaatgaagatgctggtttgttaattacttctttaggttcgatccttcttgaagcttctttctttatcaatgtagtatctagtttacctgatgtaactcttgattttaaagaaattgaacaaaatcaaattgttttaaccagtggcaaatcagaaattaccctaaaaggaaaagata
SPD_0003
SPD_0003 SP0003
1.0E-70
SPD_0003
YP_815421.1
GeneID:4441542
gctcgcctcttttatgatataatcgaaaaagaaaaggagagtagtatgtatcaagttggaaattttgttgagatgaaaaaatcacacgcttgtacaatcaagtcgactggtaaaaaggctaatcgttgggaaattacacgtgtaggagcagatatcaaaataaaatgtagtaattgtgagcatgttgtcat
SPD_0004
SPD_0004 SP0004;F2576
0.0E+00
SPD_0004
YP_815423.1
GeneID:4442821
ctttgacagcaggtatcgttggtttgccaaacgttggtaaatcaacactatttaatgcaattacaaaagcaggagcagaggcagcaaactacccatttgcgacgattgatccaaatgttggaatggtggaagttccagatgaacgcctacaaaaactaactgaaatgataactcctaaaaagacagttcccacaacatttgaatttacagatattgcagggattgtaaaaggagcttcaaaaggagaggggctag
SPD_0005
SPD_0005 SP0005;F2577
0.0E+00
pth
YP_815426.1
GeneID:4441019
taggcttgggaaatccaggggataaatattttgaaacaaaacacaatgttggttttatgttgattgatcaactagcgaagaaacagaatgtcacttttacacacgataagatatttcaagctgacctagcatcctttttcctaaatggagaaaaaatttatctggttaaaccaacgacctttatgaatgaaagtggaaaagcagttcatgctttattaacttactatggtttggatattgacgatttacttatca
SPD_0006
SPD_0006 SP0006;F2578
0.0E+00
mfd
YP_815427.1
GeneID:4442513
aacatctactaaggctcttgcaattgcaagcagtttagaaaaagaagataggattgtgttattgacgtcaacttatggagaagcagaaggacttgttagtgatcttatttctatcttgggtgaggaactcgtctatccatttttggtagatgatgctcctatggtggagtttttgatgtcttcacaggaaaaaattatttcacgggttgaagccttgcgttttttgactgattcatctaagaaagggattttagt
SPD_0007
SPD_0007 SP0007
9.0E-64
SPD_0007
YP_815429.1
GeneID:4442715
aagcgtcgtacagtcgcaaaggaagtagcagataaaggtagaatcaaggttaatggaatcttggccaaaagttcaacggacttgaaagttaatgaccaagttgaaattcgctttggcaataagttgct
SPD_0008
SPD_0008 SP0008;F2581
1.0E-168
SPD_0008
YP_815431.1
GeneID:4442430
taccaacgtcgtcgctacctgatgaaagaacgacaaaaacggaatcgttttatgggaggggtattgattttgattatgctattatttatcttgccaacttttaatttagcgcagagttatcagcaattactccaaagacgtcagcaattagcagacttgcaaactcagtatcaaactttgagtgatgaaaaggataaggagacagcatttgctaccaagttgaaagatgaagattatgctgctaaatatacacga
SPD_0009
SPD_0009 SP0009
2.0E-52
SPD_0009
YP_815432.1
GeneID:4442160
attagacgtaatagagcaatttttgagtttgtcagatgaaaagctggaagaattggctgataaaaatcaattattgcgtttacaagaagaaaaggaaaggaagaatg
SPD_0010
SPD_0010 SP0010;F2583
0.0E+00
SPD_0010
YP_815433.1
GeneID:4441394
gttgctaccaagttttttgaccatttcaaaagtcgttagcacagaaaaagaagtcgtctatacttcgaaagaaatttattacctttcacaatctgactttggtatttattttagagaaaaattaagttctcccatggtttatggagaggttcctgtttatgcgaatgaagatttagtagtggaatctgggaaattgactcccaaaacaagttttcaaataaccgagtggcgcttaaataaacaaggaattccagt
SPD_0011
SPD_0011 SP0011;F2584
0.0E+00
tilS
YP_815434.1
GeneID:4442234
taaggcggttctagctctttctggtggattagattccatgtttctatttaaggtattgtctacttatcaaaaagagttagagattgaattgattctagctcatgtgaatcataagcagagaattgaatcagattgggaagaaaaggaattaaggaagttggctgctgaagcagagcttcctatttatatcagcaatttttcaggagaattttcagaagcgcgtgcacgaaattttcgttatgatttttttcaaga
SPD_0012
SPD_0012 SP0012;F2585
0.0E+00
hpt
YP_815435.1
GeneID:4441355
tcctcgtttcacacgatgaaattacagaagcagctaaaaaactaggtgctcaattaactaaagactatgcaggaaaaaatccaatcttagttgggattttaaaaggatctattccttttatggctgaattggtcaaacatattgatacacatattgaaatggacttcatgatggtttctagctaccatggtggaacagcaagtagtggtgttatcaatattaaacaagatgtgactcaagatatcaaaggaagac
SPD_0013
SPD_0013 SP0013;F2586
0.0E+00
ftsH
YP_815436.1
GeneID:4441207
ggaataactcaggaggaagtcagcaaatcaactatactgagttggtacaagaaattaccgatggtaatgtaaaagaattaacttaccaaccaaatggtagtgttatcgaagtttctggtgtctataaaaatcctaaaacaagtaaagaagaaacaggtattcagtttttcacgccatctgttactaaggtagagaaatttaccagcactattcttcctgcagatactaccgtatcagaattgcaaaaacttgcta
SPD_0014
SPD_0014 SP2006;F2283
0.0E+00
comX1
YP_815437.1
GeneID:4441078
gaattgtcggattgggagcaagaaggcatgctctgcttacatgaattgattagtagagaagaaggactggtagacgatattccacgtttaaggaaatatttcaagaccaagtttcgaaatcgaattttagactatatccgtaaacaggaaagtcagaagcgtagatacgataaagaaccctatgaagaagtgggtgagatcagtcatcgtataagtgaggggggtctctggctagatgattattatctctttcat
SPD_0023
SPD_0023 SP0018
6.0E-90
SPD_0023
YP_815438.1
GeneID:4441397
tatggtcctacatttggtgataattttgactgggaacatgttcattttaaatttttaatttattatttagtgagatatggcattggttgtcgtaaggattttattgtttaccattatcgtgttgcttatcgtttgtatcttgaaaaattggtaatgaatcggggttttatttcttgtt
SPD_0024
SPD_0024 SP0019;F2597
0.0E+00
purA
YP_815439.1
GeneID:4441672
atgtatgtgagaaaggaagagcctgatggctcagacaagattatgacttcagttgttgttgtaggtacccaatggggtgatgaaggtaaagggaagattacagacttcctttcagcgaatgcagaagtgattgcacgttaccaaggtggtgataatgctggtcacacgattgtgattgacggtaagaaatttaagttgcacttgattccatctgggattttcttccctgaaaaaatatctgtcattgggaatggt
SPD_0025
SPD_0025 SP0020;F2598
0.0E+00
SPD_0025
YP_815440.1
GeneID:4442398
agggaggctttgagagaggctgagattgctcttgaacacgatgaaattccaattggttgtgtgattgtcaaagatggggaaatcattggtcgtgggcataatgcgcgtgaggaattacagcgagcggttatgcatgcggaaattatggctatagaggatgcgaacttgagtgaggagagctggcgcttgctggattgcacactttttgtgaccattgaaccttgtgtcatgtgtagtggagcgattgggcttgcc
SPD_0027
SPD_0027 SP0021;F2599
0.0E+00
dut
YP_815441.1
GeneID:4441073
tgcccaagcgtgagacagcgcatgcggctggttacgacttaaaggttgctgtgcgtacagttgttgcgccaggagagattgtcttggttccgacaggggttaaggcttatatgcagccgactgaggttctctacctctatgatcgttcttcaaatcctcgtaagaagggcttggttttaattaactcagttggagtcattgatggggattattatggaaatcctggaaatgaagggcatatttttgcgcagatga
SPD_0028
SPD_0028 SP0022;F2601
9.0E-132
SPD_0028
YP_815442.1
GeneID:4442141
tctgtgctacgggtcttcctttaagagtagagcctttattacatgaatggcaggtctataaaacaggaatagaaaactttgaaacagctagaagactgtttttagaaaacaagggggagttgcttcctaatagtcctattcaatatgagacagctacggaaatgaagtctcggtttctagaatgtatgtctaagtatcgagaacatcagactgtggtagttgttgctcatcgaatgctcatgcgccagttt
SPD_0029
SPD_0029 SPXX34;F2602
0.0E+00
radA
YP_815444.1
GeneID:4441523
ctagctgaggtgacttccatcaatgtcaatcgaaccaagacggagatggaggaattcaaccgtgtgcttggaggcggagtggtaccaggaagtctcgtccttatcggtggggatcctgggattgggaaatcaactcttctcctacaagtctcaacccagttgtcccaagtggggacagttctctatgtcagtggggaggagtctgcccagcagattaaactacgtgcagagcgcttaggtgatattgatagtgag
1909 570 Kbytes .Supplementary data files not provided
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