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Status
Public on Jun 26, 2011
Title
Agilent-023308 ISB Methanococcus 244K 60mer tiling array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Methanococcus maripaludis S2 Manufacturer
Agilent Technologies
Manufacture protocol
60-mer probes were tiled every 14 nt. Plus extras, 200 random control probes, and 20x10 replicate probes. See manufacturer's web site at http://www.agilent.com/
Support
glass
Coating
other
Description
Whole genome tiling array for Methanococcus maripaludis S2
Web link
http://www.agilent.com/ Contributor(s)
Yoon S , Bare JC , Reiss DJ , Baliga NS Submission date
Jan 19, 2011
Last update date
Jan 20, 2011
Contact name
Sung Ho Yoon
Organization name
Konkuk University
Department
Department of Bioscience and Biotechnology
Street address
120 Neungdong-ro, Gwangjin-gu
City
Seoul
ZIP/Postal code
05029
Country
South Korea
Samples (16)
GSM658171 , GSM658172 , GSM658173 , GSM658174 , GSM658175 , GSM658176
Series (2)
GSE26777 Methanococcus maripaludis S2 growth curve, tiling arrays
GSE26782 Parallel evolution of transcriptome structure during genome reorganization
Data table header descriptions ID PROBE_ID Probe identifier (mm, M. maripaludis S2; ex, extra probe; fwd, probe for forward strand; rev, probe for reverse strand; rnd, random control probes; rep, replicate probe)
GENOME_ACC ORF locus tag
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME START probe start position on CHROMOSOME
END probe end position on CHROMOSOME
SEQUENCE Probe Sequence
SPOT_ID
Data table ID PROBE_ID GENOME_ACC ORF CHROMOSOMAL_LOCATION CHROMOSOME START END SEQUENCE SPOT_ID 1
GE_BrightCorner
CONTROL
2
DarkCorner
CONTROL
3
DarkCorner
CONTROL
4
mm_rev_100770
NC_005791.1
chr1:1410774-1410833
chr1
1410774
1410833
TTGACGAAAACTTTATCGTAACTGACAGAAGGGCTGGAAGGATTGAAAATACATCAGAAC
5
mm_rev_074674
NC_005791.1
MMP1053 chr1:1045430-1045489
chr1
1045430
1045489
ATTTTTCCATTACTGTTCTTGTAGCTGATTCAACACCGGCATACCTGTTTGGCATGATAC
6
mm_fwd_037810
NC_005791.1
chr1:529327-529386
chr1
529327
529386
TGCAAGAGCGTTAGCATGTGACCCGGAAATAATTCTTGCAGATGAACCTACAGGAGCGCT
7
mm_fwd_045738
NC_005791.1
chr1:640319-640378
chr1
640319
640378
GTCCCCCCATTTACGGGAGATGAAGGATTATCATTTGGATCGTCGATTTTGTGTTCTAAA
8
mm_rev_022217
NC_005791.1
MMP0316 chr1:311032-311091
chr1
311032
311091
GAAAAATCGTCTGCAGAGACCGTTTTTACAAATTCAACTCCGCAACTTTTCAAAATTCCT
9
mm_rev_057934
NC_005791.1
chr1:811070-811129
chr1
811070
811129
TAATATTTTCCCTTTTAAACGGGTAAATATTATCAATTTAATTTTTCAAAATAAAACAGG
10
mm_rev_044471
NC_005791.1
MMP0630 chr1:622588-622647
chr1
622588
622647
AGGATATTTTGAAAATTCATTTACGACATCAGGATCTTTTTCAAGAAGTGATATTGCAAT
11
mm_fwd_077118
NC_005791.1
MMP1088 chr1:1079639-1079698
chr1
1079639
1079698
ATCCCCTACAACTTTTCCCCTCTTGTCGGGATAACATGGGGTTAATACCAACAAAGTTTT
12
mm_fwd_066572
NC_005791.1
MMP0945 chr1:931995-932054
chr1
931995
932054
TATTGTAGTGTTCTTCAACAATCTCTTTAAGATTTTTTTCAGGGGTTTTTTTACCAAAAA
13
mm_rev_028704
NC_005791.1
chr1:401850-401909
chr1
401850
401909
GTGAAACATTAATGAATATATTAACAGATGATGAAAAACAGCTCATTGAATTAATTAGGG
14
mm_rev_081611
NC_005791.1
chr1:1142548-1142607
chr1
1142548
1142607
GATTGCAATTTCTCCTTCGTACATGATTTTTCCCTTTTTCAAAAATAAATTAAATGAATC
15
mm_fwd_057328
NC_005791.1
chr1:802579-802638
chr1
802579
802638
ATTAGATCATACACTGGAAAAAAACATTTGTGGATTAGAAACAACATTTCTACAATGGTA
16
mm_fwd_006581
NC_005791.1
MMP0081 chr1:92121-92180
chr1
92121
92180
AAGACATGTGTCCAATCATTATTGGAGTATCTAACTTAAGATTTGGAGCAATTTTTGTTT
17
mm_rev_075796
NC_005791.1
MMP1068 chr1:1061138-1061197
chr1
1061138
1061197
CAAGAACAAGCCCAATATTTGCAATACAACTCCCAAGGGCGTTTCCAACTGCCAACTCAA
18
mm_fwd_088519
NC_005791.1
MMP1255 chr1:1239253-1239312
chr1
1239253
1239312
ACCCTGTGTTCGATTGAAGCAGGTTTTAAAACTTCGATGTAGTCTTTTTCATCTACTTTT
19
mm_fwd_042822
NC_005791.1
MMP0604 chr1:599495-599554
chr1
599495
599554
ATAATCTCCTGCCCTTAAAAGGTTTCTAAATTCTTTTTCCACCCATGCAGTTATTATCTG
20
mm_rev_094863
NC_005791.1
MMP1348 chr1:1328076-1328135
chr1
1328076
1328135
TTTATTTATTCCCATTTTGTAAATTTCGTTCATAATTTTTCTTAAATCAACTTTTTGAAC
243504 32641 Kbytes .Supplementary data files not provided
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