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Status
Public on Jun 18, 2004
Title
Hitachisoft AceGene Human Oligo Chip 30K Subset A
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Hitachisoft
Manufacture protocol
see manufacturer's web site
Description
Hitachisoft AceGene Human Oligo Chip 30K Subset A
Web link
http://hitachisoft.jp/dnasis/ex_acegene/
Submission date
Jun 16, 2004
Last update date
Oct 12, 2012
Organization
Hitachi Software Engineering Co., Ltd.
E-mail(s)
dnachip@hitachisoft.jp
Phone
+81-45-500-5111
Street address
City
1-1-43,Suehiro-cho,Tsurumi-ku,Yokohama
ZIP/Postal code
230-0045
Country
Japan
Samples (111)
GSM76894 , GSM76897 , GSM76898 , GSM76899 , GSM76900 , GSM76902
GSM76903 ,
GSM176905 ,
GSM176906 ,
GSM176907 ,
GSM176908 ,
GSM176909 ,
GSM176910 ,
GSM176911 ,
GSM176912 ,
GSM176913 ,
GSM176914 ,
GSM176915 ,
GSM176916 ,
GSM176917 ,
GSM176918 ,
GSM176919 ,
GSM176920 ,
GSM176921 ,
GSM176922 ,
GSM176923 ,
GSM176924 ,
GSM176925 ,
GSM176926 ,
GSM176927 ,
GSM176928 ,
GSM176929 ,
GSM176930 ,
GSM176931 ,
GSM176932 ,
GSM176933 ,
GSM176934 ,
GSM176935 ,
GSM176936 ,
GSM176937 ,
GSM176938 ,
GSM176939 ,
GSM176940 ,
GSM176941 ,
GSM176942 ,
GSM176943 ,
GSM176944 ,
GSM176945 ,
GSM176946 ,
GSM176947 ,
GSM176948 ,
GSM176949 ,
GSM176950 ,
GSM176951 ,
GSM176952 ,
GSM176953 ,
GSM176954 ,
GSM176955 ,
GSM176956 ,
GSM176957 ,
GSM176958 ,
GSM176959 ,
GSM176960 ,
GSM176961 ,
GSM176962 ,
GSM176963 ,
GSM176964 ,
GSM176965 ,
GSM176966 ,
GSM176967 ,
GSM176968 ,
GSM176969 ,
GSM176970 ,
GSM176971 ,
GSM176972 ,
GSM176973 ,
GSM176974 ,
GSM176975 ,
GSM176976 ,
GSM176977 ,
GSM176978 ,
GSM176979 ,
GSM176980 ,
GSM176981 ,
GSM176982 ,
GSM176983 ,
GSM176984 ,
GSM176985 ,
GSM176986 ,
GSM176987 ,
GSM176988 ,
GSM176989 ,
GSM176990 ,
GSM176991 ,
GSM176992 ,
GSM176993 ,
GSM176994 ,
GSM176995 ,
GSM176996 ,
GSM176997 ,
GSM176998 ,
GSM176999 ,
GSM177000 ,
GSM177001 ,
GSM177002 ,
GSM177003 ,
GSM177004 ,
GSM256213 ,
GSM256214 ,
GSM256215 ,
GSM256216
Series (3)
GSE3408
Novel Roles of Osteopontin and CXC Chemokine Ligand 7 in the Defense against Mycobacterial Infection
GSE7339
Gene expression data of primary lung cancer
GSE10136
Gene expression profile upon forced Notch1 activation in LS174T cells
Data table header descriptions
ID
Description
Description of the probe
CDS_ID
Aceesion number of corresponding public database (In the case of GenBank and RefSeq, the position of the CDS within the record is shown after an underscore)
GB_ACC
GenBank accession number
Entrez Gene ID
Entrez Gene ID
Symbol
Symbol of the gene derived from Entrez Gene ID
GeneName
Gene Name derived from Entrez Gene ID
IPI ID
IPI ID derived from Entrez Gene ID
GO Molecular Function
GO Molecular Function derived from Entrez Gene ID
GO Biological Process
GO Biological Process derived from Entrez Gene ID
GO Cellular Component
GO Cellular Component derived from Entrez Gene ID
ENTREZ_GENE_ID
open reading frame
SPOT_ID
spot identifier
Data table
ID
Description
CDS_ID
GB_ACC
Entrez Gene ID
Symbol
GeneName
IPI ID
GO Molecular Function
GO Biological Process
GO Cellular Component
ENTREZ_GENE_ID
SPOT_ID
AGhsA010101
interferon, alpha 8; ifna8
NM_002170_1
NM_002170
3445
IFNA8
interferon, alpha 8
IPI00031075.1
hematopoietin/interferon-class (D200-domain) cytokine receptor binding
defense response, response to virus
extracellular region, extracellular space
3445
AGhsA010102
8-oxoguanine dna glycosylase, isoform 2c; ogg1
NM_016827_1
NM_016827
4968
OGG1
8-oxoguanine DNA glycosylase
IPI00007312.1, IPI00025730.1, IPI00026574.1, IPI00220178.1, IPI00220179.1, IPI00220180.3, IPI00294126.2, IPI00303869.4, IPI00477364.2, IPI00657683.2, IPI00816589.1
damaged DNA binding, protein binding, oxidized purine base lesion DNA N-glycosylase activity, endonuclease activity, hydrolase activity, acting on glycosyl bonds, lyase activity
base-excision repair, metabolic process
cellular_component, mitochondrion, nucleoplasm, nucleus, intracellular
4968
AGhsA010103
killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4; kir2ds4
NM_012314_1
NM_012314
3803
KIR2DL2
killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2
IPI00019883.1, IPI00816129.1, IPI00844173.1, IPI00845456.1
receptor activity
immune response
integral to plasma membrane, integral to membrane, membrane
3803
AGhsA010104
fibroblast growth factor receptor 2, isoform 3 precursor; fgfr2
NM_022970_1
NM_022970
2263
FGFR2
fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)
IPI00010680.2, IPI00010777.3, IPI00216600.1, IPI00216602.2, IPI00216603.1, IPI00216604.1, IPI00216605.1, IPI00218416.1, IPI00218417.1, IPI00218418.1, IPI00218419.1, IPI00218420.1, IPI00218421.1, IPI00218422.1, IPI00218423.1, IPI00218424.2, IPI00218425.3, IPI00377178.2, IPI00383509.1, IPI00384713.3, IPI00386650.1, IPI00643986.1, IPI00647907.1, IPI00759837.2, IPI00798075.1
heparin binding, nucleotide binding, ATP binding, protein binding, transferase activity, fibroblast growth factor receptor activity, protein-tyrosine kinase activity, receptor activity
cell growth, protein amino acid phosphorylation
cell surface, integral to membrane, membrane
2263
AGhsA010105
g antigen 7; gage7
NM_021123_1
NM_021123
2543
GAGE1
G antigen 1
IPI00008809.1, IPI00011527.1, IPI00011530.2, IPI00016698.1, IPI00336105.6, IPI00470753.1, IPI00554527.1, IPI00641015.1, IPI00642235.1, IPI00645355.1, IPI00645726.1, IPI00647300.5, IPI00736423.1, IPI00738657.1, IPI00740461.1, IPI00747341.1, IPI00748837.1, IPI00783414.2
cellular defense response
2543
AGhsA010106
variable charge, x chromosome; vcx
NM_013452_1
NM_013452
26609
VCX
variable charge, X-linked
IPI00301071.1, IPI00844158.1
chromatin binding, protein binding
ribosome assembly, establishment and/or maintenance of chromatin architecture, spermatogenesis
nucleolus, nucleus
26609
AGhsA010107
udp glycosyltransferase 2 family, polypeptide b28; ugt2b28
NM_053039_1
NM_053039
7363
UGT2B4
UDP glucuronosyltransferase 2 family, polypeptide B4
IPI00301491.1, IPI00789656.1, IPI00790652.1
glucuronosyltransferase activity
estrogen catabolic process, xenobiotic metabolic process, metabolic process
microsome, endoplasmic reticulum, integral to membrane, membrane
7363
AGhsA010108
eukaryotic translation elongation factor 1 alpha 1; eef1a1
NM_001402_1
NM_001402
1915
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
IPI00025447.8, IPI00382804.1, IPI00396485.3, IPI00431441.1, IPI00431701.2, IPI00641459.2, IPI00793363.1
translation elongation factor activity, nucleotide binding, GTP binding, protein binding, GTPase activity
translational elongation, translation
eukaryotic translation elongation factor 1 complex, cytoplasm
1915
AGhsA010109
deleted in azoospermia; daz
NM_004081_1
NM_004081
1617
DAZ1
deleted in azoospermia 1
IPI00006498.1, IPI00006501.3, IPI00160336.4, IPI00334616.5, IPI00382559.1, IPI00401506.1, IPI00401964.1, IPI00470392.1, IPI00639994.1, IPI00644348.1, IPI00742060.1, IPI00744189.1, IPI00745549.2, IPI00749477.1, IPI00749494.1
RNA binding, translation activator activity, nucleotide binding, protein binding
positive regulation of translational initiation, cell differentiation, multicellular organismal development, single fertilization, spermatogenesis
nucleus
1617
AGhsA010110
amylo-1,6-glucosidase, 4-alpha-glucanotransferase isoform 1; agl
NM_000644_1
NM_000644
178
AGL
amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)
IPI00219065.2, IPI00219066.4, IPI00328318.6, IPI00448008.1, IPI00514126.2, IPI00748506.1, IPI00807447.1
cation binding, 4-alpha-glucanotransferase activity, amylo-alpha-1,6-glucosidase activity, hydrolase activity, acting on glycosyl bonds, transferase activity, transferase activity, transferring glycosyl groups
glycogen biosynthetic process, metabolic process, carbohydrate metabolic process
isoamylase complex
178
AGhsA010111
rna binding motif, single stranded interacting protein 1, isoform e; rbms1
NM_016837_1
NM_016837
5937
RBMS1
RNA binding motif, single stranded interacting protein 1
IPI00033611.5, IPI00102991.1, IPI00237654.3, IPI00477694.1
DNA binding, double-stranded DNA binding, single-stranded DNA binding, RNA binding, nucleotide binding
DNA replication, RNA processing
cellular_component, nucleus
5937
AGhsA010112
vesicle-associated membrane protein 2 (synaptobrevin 2); vamp2
NM_014232_1
NM_014232
6844
VAMP2
vesicle-associated membrane protein 2 (synaptobrevin 2)
IPI00465395.1, IPI00553138.3, IPI00790248.1, IPI00791199.1
phospholipid binding, SNARE binding, calmodulin binding
regulation of exocytosis, synaptic vesicle exocytosis, calcium ion-dependent exocytosis, membrane fusion, vesicle-mediated transport
synaptosome, synaptic vesicle membrane, zymogen granule membrane, secretory granule, integral to plasma membrane, membrane, synapse
6844
AGhsA010113
atp-binding cassette, sub-family c, member 1, isoform 4; abcc1
NM_019899_1
NM_019899
4363
ABCC1
ATP-binding cassette, sub-family C (CFTR/MRP), member 1
IPI00008338.1, IPI00008463.3, IPI00008465.3, IPI00014985.1, IPI00216262.1, IPI00216263.1, IPI00216264.1, IPI00216265.1, IPI00216266.1, IPI00216267.1, IPI00719178.1, IPI00843930.1
nucleotide binding, ATP binding, ATPase activity, coupled to transmembrane movement of substances, ATPase activity, transferase activity, kinase activity, transporter activity
transport, response to drug
membrane fraction, integral to plasma membrane, integral to membrane, membrane
4363
AGhsA010114
folate receptor 1 precursor; folr1
NM_016730_1
NM_016730
2348
FOLR1
folate receptor 1 (adult)
IPI00441498.1
GPI anchor binding, folic acid binding, receptor activity
receptor-mediated endocytosis, folic acid metabolic process, folic acid transport
membrane fraction, integral to plasma membrane, membrane
2348
AGhsA010115
ribosomal protein l21 (gene or pseudogene); rpl21
NM_000982_1
NM_000982
6144
RPL21
ribosomal protein L21
IPI00247583.5, IPI00477343.1, IPI00651652.1, IPI00788010.1
RNA binding, structural constituent of ribosome
translation
cytosolic large ribosomal subunit (sensu Eukaryota), ribosome, intracellular
6144
AGhsA010116
small nuclear ribonucleoprotein polypeptide n; snrpn
NM_022805_1
NM_022805
6638
SNRPN
small nuclear ribonucleoprotein polypeptide N
IPI00024246.2, IPI00028156.3, IPI00220360.2, IPI00785142.2, IPI00789767.1, IPI00790058.1, IPI00790449.1, IPI00790821.1, IPI00791297.1, IPI00791864.1, IPI00792137.1, IPI00792592.1, IPI00793157.1, IPI00794400.1, IPI00794440.1, IPI00795098.1, IPI00795861.1, IPI00796419.1, IPI00797016.1, IPI00797680.1, IPI00798321.1, IPI00845430.1
molecular_function, RNA binding, identical protein binding
biological_process, RNA splicing, mRNA metabolic process
cellular_component, small nuclear ribonucleoprotein complex, spliceosome, nucleus
6638
AGhsA010117
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, complete cds; glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
X01677
X01677
2597
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
IPI00219018.7, IPI00788737.1, IPI00789134.1, IPI00793922.1, IPI00794508.1, IPI00794605.1, IPI00794991.1, IPI00795257.1, IPI00795622.1, IPI00796111.1, IPI00796735.1, IPI00797221.1
NAD binding, protein binding, oxidoreductase activity, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
glycolysis, glucose metabolic process
cytoplasm
2597
AGhsA010118
g antigen b1; gageb1
NM_003785_1
NM_003785
8712
PAGE1
P antigen family, member 1 (prostate associated)
IPI00025748.2
cellular defense response
8712
AGhsA010119
heterogeneous nuclear ribonucleoprotein a1, isoform a; hnrpa1
NM_002136_1
NM_002136
144983
heterogeneous nuclear ribonucleoprotein A1-like
IPI00414312.2
nucleic acid binding, nucleotide binding
144983
AGhsA010120
ribosomal protein l12; rpl12
NM_000976_1
NM_000976
6136
RPL12
ribosomal protein L12
IPI00024933.3, IPI00479158.5, IPI00816063.1
RNA binding, structural constituent of ribosome
translation
cytosolic large ribosomal subunit (sensu Eukaryota), ribosome, intracellular
6136
Total number of rows: 10368 Table truncated, full table size 3487 Kbytes .
Supplementary data files not provided