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Status
Public on Jun 24, 2004
Title
NHGRI Custom cDNA Microarray
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
This cDNA microarray encompasses ~16,000 genes printed in the Microarray Core of the the National Human Genome Research Institute (NHGRI)/NIH. These cDNA microarrays were generated from cDNA clones obtained from the sequence verified IMAGE clone selection from Research Genetics (Invitrogen corporation, Inc). Of these clones, 75% represent genes with functional annotation and the remaining represent ESTs and hypothetical proteins. The gene description of these clones was based on the Unigene database, build #148 and the chromosomal base location of these genes was updated from University of California Santa Cruz’s (UCSC) Genome Browser database. This update was performed through the GenBank accession ID of the Image clone ID. For quality control, 2 slides per lot were hybridized for spot consistency, homogeneity and signal to noise ratios.
Submission date
Jun 17, 2004
Last update date
Oct 28, 2005
Contact name
Jeff Kiefer
E-mail(s)
jkiefer@tgen.org Phone
240-631-1607 ext 240
Organization name
Translational Genomics Research Institute (TGen)
Department
CDDL
Street address
20 Firstfield Rd, Suite 110
City
Gaithersburg
State/province
MD
ZIP/Postal code
20878
Country
USA
Samples (28)
GSM25723 , GSM25724 , GSM25725 , GSM25726 , GSM25727 , GSM25728
GSM25729 ,
GSM25730 ,
GSM25754 ,
GSM25757 ,
GSM25758 ,
GSM25760 ,
GSM25762 ,
GSM25763 ,
GSM25765 ,
GSM25773 ,
GSM25775 ,
GSM25776 ,
GSM25777 ,
GSM25778 ,
GSM25780 ,
GSM25781 ,
GSM25782 ,
GSM25783 ,
GSM25824 ,
GSM25855 ,
GSM25856 ,
GSM25857 Series (4)
GSE1490 GM00156 EMETINE TIME COURSE
Data table header descriptions ID GB_ACC GenBank Accession Number;
CLONE_ID Image Clone ID
CLONE_INDEX Unique Clone Identifier
Clone Name Clone Name
UNIGENE Unigene Number of Clone (Build #148) ;
UNIGENE2 Second Unigene Number of Clone (Build #148);
SPOT_ID Column added by GEO staff to facilitate sequence tracking in Entrez GEO
Data table ID GB_ACC CLONE_ID CLONE_INDEX Clone Name UNIGENE UNIGENE2 SPOT_ID 1
BC000385 IMAGE:21652
1
Human mRNA for alpha-catenin, complete cds
178452
178452
2
BC001034 IMAGE:39993
193
Human superoxide dismutase (SOD-1) mRNA, complete cds
75428
75428
3
AK026633 IMAGE:22260
5
Human cytochrome c-1 gene, complete cds
289271
4
BC001380 IMAGE:40304
197
Unknown EST
469
5
NM_000987 IMAGE:22493
9
HPV16 E1 protein binding protein
91379
91379
6
AP000694 IMAGE:41199
201
Human chromatin assembly factor-I p60 subunit mRNA, complete cds
75238
75238
7
AI202952 IMAGE:23132
13
H.sapiens mRNA for splicing factor SF3a120
347286
334691
8
AL031668 IMAGE:41511
205
Human translational initiation factor 2 beta subunit (elF-2-beta) mRNA, complete cds
12163
12163
9
BC000484 IMAGE:25584
17
Human cytochrome bc-1 complex core protein II mRNA, complete cds
173554
10
BC006501 IMAGE:42096
209
Human cytoplasmic chaperonin hTRiC5 mRNA, partial cds
1708
1708
11
D25328 IMAGE:26184
21
Human mRNA for platelet-type phosphofructokinase, complete cds
99910
99910
12
AY007135 IMAGE:42352
213
Human ADP/ATP translocase mRNA, 3' end, clone pHAT8
164280
164280
13
J05225 IMAGE:502055
385
arylsulfatase B
1256
1256
14
BC008723 IMAGE:1493527
577
asparagine synthetase
75692
15
389
389
16
L20463 IMAGE:1455566
581
adenosine A3 receptor
258
17
NM_002820 IMAGE:503841
393
parathyroid hormone-like hormone
89626
89626
18
NM_001697 IMAGE:1472150
585
ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferr
76572
19
U49516 IMAGE:280371
397
5-hydroxytryptamine (serotonin) receptor 2C
46362
46362
20
NM_001007 IMAGE:1492147
589
ribosomal protein S4, X-linked
108124
15616 1151 Kbytes .Supplementary data files not provided
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