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| Status |
Public on Feb 16, 2011 |
| Title |
University of Cambridge, Dept of Pathology, Centre for Microarray Resources 1 Mb aCGH platform_3584 unique clones |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Centre for Microarray Resources |
| Manufacture protocol |
http://www.cgs.path.cam.ac.uk/
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| Description |
This platform is almost identical to GPL7199, however annotation was taken from NCBI build 36, and a few more clones were included.
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| |
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| Submission date |
Feb 15, 2011 |
| Last update date |
Feb 16, 2011 |
| Contact name |
Ian Roberts |
| E-mail(s) |
ian.roberts@cantab.net
|
| Phone |
0044 1223 763 279
|
| Organization name |
Hutchison MRC Research Centre
|
| Department |
Cancer Cell Unit
|
| Lab |
Coleman
|
| Street address |
Hills Road
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0XZ |
| Country |
United Kingdom |
| |
|
| Samples (40)
|
GSM675740, GSM675741, GSM675742, GSM675743, GSM675744, GSM675745
GSM675746, GSM675747, GSM675748, GSM675749, GSM675750, GSM675751, GSM675752, GSM675753, GSM675754, GSM675755, GSM675756, GSM675757, GSM675758, GSM675759, GSM675760, GSM675761, GSM675762, GSM675763, GSM675764, GSM675765, GSM675766, GSM675767, GSM675768, GSM675769, GSM675770, GSM675771, GSM675772, GSM675773, GSM675774, GSM675775, GSM675776, GSM675777, GSM675778, GSM675779
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| Series (2) |
| GSE27332 |
Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome [camb1Mb data] |
| GSE27333 |
Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome |
|
| Data table header descriptions |
| ID |
Unique ID as rearrayed by CMR |
| Block |
Clone replicate block number |
| Row |
Intra block spot row number |
| Column |
Intra block column number |
| Name_Sanger |
Sanger Name |
| Position |
Chromosome location in megabase pairs |
| Chr |
Chromosome number |
| RANGE_GB |
GenBank Accession number |
| CLONE_ID |
Clone ID |
| SANGER |
Sanger Clone ID |
| RANGE_START |
Start position |
| RANGE_END |
End position |
| Data table |
| ID |
Block |
Row |
Column |
Name_Sanger |
Position |
Chr |
RANGE_GB |
CLONE_ID |
SANGER |
RANGE_START |
RANGE_END |
| CMR_1MbCloneSet_96_1A1 |
13 |
20 |
6 |
SC1_1Mb_BAC1A1 |
1.0320055 |
1 |
NC_000001.9 |
RP11-465B22 |
bA465B22 |
918164 |
1145847 |
| CMR_1MbCloneSet_96_9E1 |
13 |
5 |
21 |
TelomereA1 |
1.042981 |
1 |
NC_000001.9 |
CTB-14E10 |
PAC14E10 |
941583 |
1144379 |
| CMR_1MbCloneSet_96_3A1 |
10 |
20 |
6 |
SC1_1Mb_PACA1 |
3.284788 |
1 |
NC_000001.9 |
RP4-785P20 |
dJ785P20 |
3214534 |
3355042 |
| CMR_1MbCloneSet_96_3A2 |
2 |
20 |
6 |
SC1_1Mb_PACA2 |
4.542414 |
1 |
NC_000001.9 |
RP1-37J18 |
dJ37J18 |
4476758 |
4608070 |
| CMR_1MbCloneSet_96_1A2 |
5 |
20 |
6 |
SC1_1Mb_BAC1A2 |
5.954491 |
1 |
NC_000001.9 |
RP11-49J3 |
bA49J3 |
5866184 |
6042798 |
| CMR_1MbCloneSet_96_3A3 |
10 |
14 |
19 |
SC1_1Mb_PACA3 |
7.12332 |
1 |
NC_000001.9 |
RP3-438L4 |
dJ438L4 |
7059934 |
7186706 |
| CMR_1MbCloneSet_96_1A3 |
13 |
14 |
19 |
SC1_1Mb_BAC1A3 |
7.742541 |
1 |
NC_000001.9 |
RP11-338N10 |
bA338N10 |
7641550 |
7843532 |
| CMR_1MbCloneSet_96_28E2 |
6 |
8 |
13 |
NONSC14E2 |
9.084299 |
1 |
NC_000001.9 |
RP11-484P7 |
bA484P7 |
9083937 |
9084661 |
| CMR_1MbCloneSet_96_3A4 |
2 |
14 |
19 |
SC1_1Mb_PACA4 |
9.1997115 |
1 |
NC_000001.9 |
RP3-510D11 |
dJ510D11 |
9135174 |
9264249 |
| CMR_1MbCloneSet_96_3A5 |
10 |
12 |
13 |
SC1_1Mb_PACA5 |
10.122792 |
1 |
NC_000001.9 |
RP4-575L21 |
dJ575L21 |
10075630 |
10169954 |
| CMR_1MbCloneSet_96_3A6 |
2 |
12 |
13 |
SC1_1Mb_PACA6 |
11.0426555 |
1 |
NC_000001.9 |
RP4-635E18 |
dJ635E18 |
10986318 |
11098993 |
| CMR_1MbCloneSet_96_3A7 |
10 |
6 |
18 |
SC1_1Mb_PACA7 |
11.551099 |
1 |
NC_000001.9 |
RP4-539L13 |
dJ539L13 |
11483207 |
11618991 |
| CMR_1MbCloneSet_96_13C11 |
13 |
3 |
8 |
Cancer_1C11 |
11.8489885 |
1 |
NC_000001.9 |
RP11-196P5 |
bA196P5 |
11765728 |
11932249 |
| CMR_1MbCloneSet_96_3A8 |
2 |
6 |
18 |
SC1_1Mb_PACA8 |
12.4071015 |
1 |
NC_000001.9 |
RP4-636F13 |
dJ636F13 |
12351219 |
12462984 |
| CMR_1MbCloneSet_96_1A4 |
5 |
14 |
19 |
SC1_1Mb_BAC1A4 |
14.600994 |
1 |
NC_000001.9 |
RP11-285P3 |
bA285P3 |
14511126 |
14690862 |
| CMR_1MbCloneSet_96_3A9 |
10 |
22 |
4 |
SC1_1Mb_PACA9 |
15.493034 |
1 |
NC_000001.9 |
RP4-560M15 |
dJ560M15 |
15425500 |
15560568 |
| CMR_1MbCloneSet_96_1A5 |
13 |
12 |
13 |
SC1_1Mb_BAC1A5 |
16.7335945 |
1 |
NC_000001.9 |
RP11-45I3 |
bA45I3 |
16660236 |
16806953 |
| CMR_1MbCloneSet_96_3A10 |
2 |
22 |
4 |
SC1_1Mb_PACA10 |
17.248294 |
1 |
NC_000001.9 |
RP1-37C10 |
dJ37C10 |
17140091 |
17356497 |
| CMR_1MbCloneSet_96_1A6 |
5 |
12 |
13 |
SC1_1Mb_BAC1A6 |
18.3245935 |
1 |
NC_000001.9 |
RP11-174G17 |
bA174G17 |
18255166 |
18394021 |
| CMR_1MbCloneSet_96_3A11 |
10 |
4 |
3 |
SC1_1Mb_PACA11 |
19.197066 |
1 |
NC_000001.9 |
RP4-540O3 |
dJ540O3 |
19127387 |
19266745 |
Total number of rows: 3235
Table truncated, full table size 337 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13177_CMR_1Mb_aCGH_clone_annotation.txt.gz |
144.0 Kb |
(ftp)(http) |
TXT |
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